Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1229 ATGGATTGGCAAGAGAAAGACGATGATCGCGCTTCAGACTCGTCCTCGTCGTCAGACACATACCTCTTAGGCTTCGTGATGGGCAGCATCGTGGGCCTTCAGCACCACTCCGGCACCATCCGCGGCCGCGCATTGGTGGGCCTGGTCCGCGAGGCCCACAACCCCCACGACCCAAATGCCATCCTTGTCGTCAATACCGACGGCCTCTCCATCGGCTACATCGAGCGCTCCGTCGCCGCCGCCCTCTCACCCCTCATAGACGAGCAACTCATCAAGGTCGAGACCATCGTCCCCGACGCTAAAAAATATCACAGAAACCATGACTGCCAAATCCACGTCTTCGCTCAGGTTCGCGACTTTAAGGCCGTCAAAGACTCCCTCTCCAACGCCAGGCTCAACATCATCACCGAGTCCGACGCCGCCTTCACCCTCTCCGACTCCGTTGCGGTTAAAGAAACCCGAGCGCAGAGAAAGTCAACGTCCGTCGACGCCATTTTCAAAAGGGTCAACCGAAGCTACACCGGCAACAGCAGCGTCATCCAAGTCCTGGAGCCTCCGAGGGGCATCATCAAGACGGAGCTTTTCCAGCACCAGAAGGAGGCTCTCGCGTGGCTCGTCCACCGCGAAAAAACTGATGATCTGCCACCGTTCTGGGAAGAAAGCGACGGAAAATTCGTAAATATCTTAACCGATTACCAAACCAATGTCAGGCCTGGCCCTTTACGAGGTGGCATCTTCGCCGATGAAATGGGGTTAGGAAAGACCTTAACTTTGCTGTCTTTGATTGCTTATGACAAAAAGAGCCAAATGGGTGTCTCCAAAAAGTATAGAACTGACAGAAGGGTGGTTTCTTCAGATAGACGACGCAGCATTGGTGAATGTGACTGTGAGAGCTCCCCAACTTTGGTGGTGTGTCCTCCCTCTGTTTTGTCAACATGGATAACACAGTTGGAGGAACACACTGAGCTTGGTGCATTGAAGACTTGCATGTATTATGGAGAAAAAAGGACCACTAATCTTTGGGAGCTCATGTCGCATGATCTGGTGTTGACTACATACGCTACTTTGGCTGGTGAAAAACATTTGGATACTATGCCGGCAAAGAAAGTGAATTGGCGGAGAATTGTATTGGATGAGGCACACACCATCAAGAATTTCAATGCTAAACAGAGTGTGGCGGTTTGTGACTTGAATGCTCAGTGCAGATGGGCTGTTACGGGGACACCGATCCAAAATGGCTCCATTGATTTGTTTTCTATAATGGTCTTCTTGCAGTTTGAACCCTTTTCACTCAGACGCCAATGGAGAGAGTTGGTGCAACGCTCTCTTAATCAGGGCACGGACAAAGGGCTCGTGCGTTTGCAGATTTTGATGGATGCAATTGCTTTGCGAAGAACAAAAGATATGATATTGGTGGGGCTGCCACCTAAAACCACTGAGATTTGTTATGTCGAGCTTTCGTTGGATGAACGTCAACTGTATGATCAGTTGAAAGAGGAAACAAAGACATTGTTGAATCGTATTTTGTATGACAACAGTCTAGTGTCCCAATATTCTGCTGTACTAAGTAGGGTTCTAAGACTTCGCCAAATCTGTACTGATTTGAAATTGTGTGCAGATCAGTCGCTACTCCTTACAGATATTGAAGATGTCTCCAATAATCCAGCACTGCTGCAAACATTACTTGGGCAGCTGCAAGATGATGAAGATATTGACTGTCCAATTTGTTTATCTCCCCCGTCAGAGGCTGTGATCACAAGTTGTGCTCACATTTTCTGCCGAGTCTGTATTCTGAGATCTCTACAAAAGAGCAAGCCCTGTCCTCTTTGCCGGAACCCCCTCTCAGAATCTCACTTGTTCTCAGCACCTCCCGAGTCTTTCAAGGCAGATAGTGCTGAAGTGAGCTCATCAATATCCTCCAAAGTGTCTACATTGATAAGACTTCTTACAGAATCGAGAGACCAACATCCAGCTGCAAAGTCAGTTGTATTCTCGCAATTTCGAAAGCTGTTATTGTTACTGGAAGCAACTCTGAATGCAGCTGGATTCAAGACCTTGCGTCTTGATGGGTCAATGAATGCTACACAAAGGGCCAATGTTATTGAGAAGTTTCAATCCCAAGAAAGAGACAGGCCAACAGTTCTTCTTGCAAGCCTCAGGGCTTCAAGTGCAGGTATAAATCTCACATCTGCCTCTAGACTGTACTTTATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGACCGTGTCCACCGCATTGGACAGAAAGAGGCCGTGAAGATTGTTCGATTGATTGCTCGAAACAGCATCGAAGAGCGGATGTTGATGTTGCAGGAGAAGAAGAAACAACTGCCTAGGGAACCACCTGGGAATGGGTCAGGAGTAAACGGCATGGGCATGAATGATATACATTTCCTTTTAGATTGCTAG 2439 0.4818 MDWQEKDDDRASDSSSSSDTYLLGFVMGSIVGLQHHSGTIRGRALVGLVREAHNPHDPNAILVVNTDGLSIGYIERSVAAALSPLIDEQLIKVETIVPDAKKYHRNHDCQIHVFAQVRDFKAVKDSLSNARLNIITESDAAFTLSDSVAVKETRAQRKSTSVDAIFKRVNRSYTGNSSVIQVLEPPRGIIKTELFQHQKEALAWLVHREKTDDLPPFWEESDGKFVNILTDYQTNVRPGPLRGGIFADEMGLGKTLTLLSLIAYDKKSQMGVSKKYRTDRRVVSSDRRRSIGECDCESSPTLVVCPPSVLSTWITQLEEHTELGALKTCMYYGEKRTTNLWELMSHDLVLTTYATLAGEKHLDTMPAKKVNWRRIVLDEAHTIKNFNAKQSVAVCDLNAQCRWAVTGTPIQNGSIDLFSIMVFLQFEPFSLRRQWRELVQRSLNQGTDKGLVRLQILMDAIALRRTKDMILVGLPPKTTEICYVELSLDERQLYDQLKEETKTLLNRILYDNSLVSQYSAVLSRVLRLRQICTDLKLCADQSLLLTDIEDVSNNPALLQTLLGQLQDDEDIDCPICLSPPSEAVITSCAHIFCRVCILRSLQKSKPCPLCRNPLSESHLFSAPPESFKADSAEVSSSISSKVSTLIRLLTESRDQHPAAKSVVFSQFRKLLLLLEATLNAAGFKTLRLDGSMNATQRANVIEKFQSQERDRPTVLLASLRASSAGINLTSASRLYFMEPWWNHAVEEQAMDRVHRIGQKEAVKIVRLIARNSIEERMLMLQEKKKQLPREPPGNGSGVNGMGMNDIHFLLDC 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1229 812 Gene3D - 229 466 IPR038718 -
Aed7g1229 812 Pfam SNF2-related domain 197 536 IPR000330 GO:0005524|GO:0140658
Aed7g1229 812 Pfam Zinc finger, C3HC4 type (RING finger) 572 615 - -
Aed7g1229 812 SMART ultradead3 190 435 IPR014001 -
Aed7g1229 812 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 644 806 IPR001650 -
Aed7g1229 812 SUPERFAMILY RING/U-box 558 617 - -
Aed7g1229 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 624 IPR013083 -
Aed7g1229 812 Pfam Helicase conserved C-terminal domain 641 757 IPR001650 -
Aed7g1229 812 Gene3D - 475 797 IPR027417 -
Aed7g1229 812 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 427 IPR014001 -
Aed7g1229 812 SMART helicmild6 672 757 IPR001650 -
Aed7g1229 812 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 273 791 - -
Aed7g1229 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 465 IPR027417 -
Aed7g1229 812 ProSiteProfiles Zinc finger RING-type profile. 573 611 IPR001841 -
Aed7g1229 812 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 6 267 - -
Aed7g1229 812 ProSitePatterns Zinc finger RING-type signature. 588 597 IPR017907 -
Aed7g1229 812 CDD SF2_C_SNF 645 768 - -
Aed7g1229 812 Pfam HIRAN domain 24 117 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aed7g1229 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 792 IPR027417 -
Aed7g1229 812 Gene3D - 13 134 - -
Aed7g1229 812 SMART HIRAN_2 23 117 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aed7g1229 812 SMART ring_2 573 610 IPR001841 -
Aed7g1229 812 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 273 791 - -
Aed7g1229 812 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 6 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1229 Aed-Chr7 9918607 9923584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1229 18 790 RAD5 or RAD16-like Gene Family AT5G05130 53.742 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed7g1229 SNF2_N 7.7e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1229 K15711 - gmx:100791783 1169.07