Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1228 ATGAAGTCTTGGTCACTGGACGAGTGGAGGAAGTACTTCGGGTCAGCGAATTCGGACATATTCGAGATAATTGAGCACGCCATAATTGTGGCGGCTTCGGATTGCCCCAAGGAGTTCAGAGTGAGAAGGGATGGAATTGCTGAGAAGCTGTTTTCTGCAAGGTTGACTCGCTGTGTGGGGTGTGATCATGTGGACTTGGCTGTGGGTTCTGATGCTAAAGAGAAACATGATCATGATGGTCATGGTCATGTTGAGGATGATCATCATCATGAGAGAGATGAGGTTGAGTTTGCAATTGAAGGGGCAAGCAATGAGAGCAAGGTCAATGGAAATGAGGAGAGGGATGCCAATCTTGGTAGCAATCTTAGCTTTGACGAGGCTGAGGCATTGAGTGATGAGTTGGAAGAGCAGTCTCAGTATGTGGGGGAGATTATGAGAATCAGGGATGTTCTGCGTAATCGTGCTGATGAGTCTGAGGCTGTGATACTTGATTCTTTGAGGAGGCTTCAACTGTTGGAGCTCACCGTGGACTGTTTGAAGGTAACTGAGATTGGCAAGGCTGTGAATCCTCTCCGAAAGCATGTGTCGAAGGACGTTCGTCAACTTGCCAAGACCCTCATCAATTGCTGGAAAGCAGTGGTAGATGAGTGGGTCAAGGTCACTGAAACCACAGCTATCGCAGTTCTCCCTGTTGGATCGTATCTGTCAACGGTGCAGTTCTTTGATGGAATGGACGATATTGGAAATATTCGACCAGGTGGGCCATTCAGCAAGAACAATGGCCGAAAGCCATCTTTTGACTCTCATGTTGTAGAGAGGAAGTCACAGGCTCCCCGTGAGGTAGCCGTCGTTAACAGAGATGTCAAGAGTCAGCAACAACCAAAGAAAAATGAGGCTGCTGTGCCTGTGAGGCCAAATAAACCAGTAACAGCTGATTCTGCGCCTGGCCGACTCCCAAAATCAAATGTGCAGAGAAAAAGTAACAACATGGAGCCAAACAGGCAGCAAAAAATAGAGAACAATTCAATCACAAAGAGGCCTCTCACTGGCCAACTAGATAAATCTATGCGTTCTGATGATGCGGCCATCCAAGTGAAGCTAGAAGCCACCAAGAGGAAACTTCAAGAGAGCTATCAACAAGTTGAAAAAGCCAAGAGGCAGAGAACAATACAAGTGATGGAAATAAACGAAATCCCGAAACAAGGTGTCCACAGAAGTCAGCATTTCAAACCTGCACATCACAATAGGAACTGGGCCAATGGTGGTAGAAGATGA 1275 0.4682 MKSWSLDEWRKYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDGIAEKLFSARLTRCVGCDHVDLAVGSDAKEKHDHDGHGHVEDDHHHERDEVEFAIEGASNESKVNGNEERDANLGSNLSFDEAEALSDELEEQSQYVGEIMRIRDVLRNRADESEAVILDSLRRLQLLELTVDCLKVTEIGKAVNPLRKHVSKDVRQLAKTLINCWKAVVDEWVKVTETTAIAVLPVGSYLSTVQFFDGMDDIGNIRPGGPFSKNNGRKPSFDSHVVERKSQAPREVAVVNRDVKSQQQPKKNEAAVPVRPNKPVTADSAPGRLPKSNVQRKSNNMEPNRQQKIENNSITKRPLTGQLDKSMRSDDAAIQVKLEATKRKLQESYQQVEKAKRQRTIQVMEINEIPKQGVHRSQHFKPAHHNRNWANGGRR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1228 424 MobiDBLite consensus disorder prediction 252 356 - -
Aed7g1228 424 CDD TFIIS_I 143 215 - -
Aed7g1228 424 Coils Coil 364 387 - -
Aed7g1228 424 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 421 IPR044805 -
Aed7g1228 424 SMART TFS2_5 141 216 IPR003617 GO:0005634
Aed7g1228 424 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 139 221 IPR035441 -
Aed7g1228 424 MobiDBLite consensus disorder prediction 265 280 - -
Aed7g1228 424 MobiDBLite consensus disorder prediction 406 424 - -
Aed7g1228 424 MobiDBLite consensus disorder prediction 400 424 - -
Aed7g1228 424 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 225 IPR035441 -
Aed7g1228 424 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Aed7g1228 424 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Aed7g1228 424 MobiDBLite consensus disorder prediction 320 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1228 Aed-Chr7 9893671 9898010 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aed7g1228 Med26 9.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1228 - - gmx:100799367 589.341