LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g1225	ATGGCATCTTCAAGACCCATCGTTCACCAACACCAACACCAACACACTCTAGGTGAAGAAGCAGTAGTGGAGGGAGGGAAACAGCAGCAGAAGAAAAAGGGTATAGAAGTTGGAAGGAATTACCGGAAGATATTAGGTGATATTGGGAATTTGGCCATTAATCACCCCATCACAAGGAGTTTTGGTGCCACACTACTTGCCAATGTACGACTACAAGCAGAAGCAGCTGCTGCCAAGAATAACAAGAAACAGGCTTCTGACAATGTAAAACCAAAGGAATCACGCGCTTTTACTTCAGTTCTCACAGCTAGAAGCAAGGCAGGATGCGGCATAACAAAGAAACTAAAGGAGCAGATTATCGACATCGATGCTGGTGATGTTGACAATGAGCTTGCTGCTGTGGAATATATTGATGACATTTACAAGTTCTATAAGCTTGTTGAGAACGAGAACCACTCTCACGGCTACATAGACTCGCAACCAGAGATCGGTGAGAGGTTGAGAGCTATACTAGCTAATTGGCTGATAGATGTCAACACCAAATATGAACTTTCACTTGAGACCCTTTACTTGACCATCAATATAGTTGATCGGTTCCTAGGAGTGAGGACAGTTCCAAGGATGGAATTTCAATTGGTTGGCATCAGTGCCATGCTCATGGCATCCAAATACGAAGAAATCTATCCCCTTCAGGTTAATGAATTAGTCCGGCTCACACCATACACTCATGAACAGGTACTGGTCATGGAGAAAACCATATTGGAGGAGCTGGAATGGACTTTGGCTGTGCCAACACCTCTTCATTTTCTGGTTCGTTTTATCAAGGCATCAGTTCCACCAGATCAGGAGTTAGAAAACATGGCCCACTTTCTTTCTCAGTTGGGAATGATGCACTATGCCACCATAAAGTATTGTCCATCAATGATTGCTGCCTCAGCAGTCTTTGCAGCTAGATGCACTCTGAATAAGACTCCCCTTTGGAATGAGACACTTAAACTGCACACCGGTTACTCACAAGAACAACTTATGGATTGTGCTAGATTATTGGTGAACTTCCACTCCATGGCTGGGAATGGAGAGGAGAAAGTTGTGTACATAAAGTATTCTGATCCTCAGAAAGGAGCTGTTGCTATGCTCCCACCAGCTAAAAATCTTCTTCCTGAAGGTTCTGATTCTCAATAG	1182	0.4365	MASSRPIVHQHQHQHTLGEEAVVEGGKQQQKKKGIEVGRNYRKILGDIGNLAINHPITRSFGATLLANVRLQAEAAAAKNNKKQASDNVKPKESRAFTSVLTARSKAGCGITKKLKEQIIDIDAGDVDNELAAVEYIDDIYKFYKLVENENHSHGYIDSQPEIGERLRAILANWLIDVNTKYELSLETLYLTINIVDRFLGVRTVPRMEFQLVGISAMLMASKYEEIYPLQVNELVRLTPYTHEQVLVMEKTILEELEWTLAVPTPLHFLVRFIKASVPPDQELENMAHFLSQLGMMHYATIKYCPSMIAASAVFAARCTLNKTPLWNETLKLHTGYSQEQLMDCARLLVNFHSMAGNGEEKVVYIKYSDPQKGAVAMLPPAKNLLPEGSDSQ	393

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g1225	393	Pfam	Cyclin, N-terminal domain	139	261	IPR006671	-
	Aed7g1225	393	MobiDBLite	consensus disorder prediction	12	33	-	-
	Aed7g1225	393	SUPERFAMILY	Cyclin-like	263	383	IPR036915	-
	Aed7g1225	393	Coils	Coil	68	88	-	-
	Aed7g1225	393	MobiDBLite	consensus disorder prediction	1	33	-	-
	Aed7g1225	393	SUPERFAMILY	Cyclin-like	129	259	IPR036915	-
	Aed7g1225	393	PIRSF	Cyclin_A_B_D_E	62	393	IPR039361	-
	Aed7g1225	393	PIRSF	Cyclin_A_B_D_E	1	87	IPR039361	-
	Aed7g1225	393	ProSitePatterns	Cyclins signature.	168	199	IPR006671	-
	Aed7g1225	393	Gene3D	-	139	377	-	-
	Aed7g1225	393	Gene3D	-	153	262	-	-
	Aed7g1225	393	CDD	CYCLIN	263	350	IPR013763	-
	Aed7g1225	393	Pfam	Cyclin, C-terminal domain	264	381	IPR004367	-
	Aed7g1225	393	SMART	cyclin_7	268	351	IPR013763	-
	Aed7g1225	393	SMART	cyclin_7	173	255	IPR013763	-
	Aed7g1225	393	PANTHER	CYCLINS	80	387	IPR039361	-
	Aed7g1225	393	CDD	CYCLIN	167	254	IPR013763	-
	Aed7g1225	393	PANTHER	G2/MITOTIC-SPECIFIC CYCLIN S13-6	80	387	-	-
	Aed7g1225	393	SMART	Cyclin_C_2	264	382	IPR004367	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g1225	Aed-Chr7	9835198	9837635	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g1225	1	392	Core Cell Cycle Gene Families	AT4G37490	46.712	2.72e-120	353

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g1225	K21777		-	gmx:100789141	560.066