Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1206 ATGACGGAAAGAGTATCCATCAGAAAGCTCAAGCGCAAGATGGAGGAAGAACCACTCACCTTGGTCGGGGATTCGGAACAACAACAACCCTTACTCTCTTGCAAATTTTGTAGCAAGAAGTTTTGCAATTCTCAAGCCCTAGGAGGACACCAAAATGCTCACAAACGCGAGCGCCTCCTCTTAAAAATTGAGAAAGAGTTAGAAATTAACGCTTTAGGATTTGCGTCACAAAATGTTCATCTTTGTCCGCAACCATTTTCGTCCATGCCAAACCTTCCCGTGCAAGGGATGATACCATTTTATCATGGTCCATTCATGCACCCTATGACTCATGTATCTAACATGTCTTGTACTCCTGCACCACCTGAAATTGAAGGATTTTTTTACCCGTTCCCTTCACTTGTGCAAAGTGTATCTAAGAGTCTCATTGGAGGTTCTTCTTCTCGTGTTGGTGAAGGTTCTGGTGGTCTTCAAGAAAGTCTACGTAAGTTAACTAAAGACACATCTTCAACAGATTTGGACTTGTCACTCAACCTTTGA 540 0.4259 MTERVSIRKLKRKMEEEPLTLVGDSEQQQPLLSCKFCSKKFCNSQALGGHQNAHKRERLLLKIEKELEINALGFASQNVHLCPQPFSSMPNLPVQGMIPFYHGPFMHPMTHVSNMSCTPAPPEIEGFFYPFPSLVQSVSKSLIGGSSSRVGEGSGGLQESLRKLTKDTSSTDLDLSLNL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1206 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Aed7g1206 179 PANTHER ZINC FINGER PROTEIN JAGGED 31 116 IPR045320 GO:0003700
Aed7g1206 179 Gene3D Classic Zinc Finger 8 72 - -
Aed7g1206 179 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 31 116 - -
Aed7g1206 179 SUPERFAMILY beta-beta-alpha zinc fingers 32 59 IPR036236 -
Aed7g1206 179 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1206 Aed-Chr7 9657547 9658086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1206 25 70 C2H2 Transcription Factor Family AT5G01860 58.696 4.04e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed7g1206 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1206 - - ccaj:109802678 132.494