LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g1174	ATGCCGATGGGGAGGAAGCGAAAGGCAGCACCCAAATCTTCTCAATCCGCCGAGCCCCCACTGAAGCACCACCAACCAGAACCCGAACATGCCTCCCCCGAATACGAAGAAGTCGAAGAAGAAGTCGAGGAAGAAGAAGAGGTAGAGGAAGAGGTAGAAGAAGTAGAAGAAGAAGAGGAGGTGGAAGAAGAGGAGGAAGAAGAAGAAGACGACAACGACGACAAAGAGCAGCAACAACTGCTACAGCTACAACAACAAGACGAAGATGACGAAGACGACCCGATCTCGAAGCTTCTGGAGCCGTTAAGCAAGGACCAGATCCTGAACCTTCTCTGCGAGGCGTCGGCGAAGCACCGCGACGTGGCCGACCGGATCCGCAAGGCGGCCGACGAGGATCCCGCCCACCGGAAGATATTCGTGCATGGCCTGGGCTGGGACACCACCGCCGGAACCCTGATCAGCGCCTTCCGCCAGTACGGCGAGATCGAGGACTGCAAAGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACGCGCCGCGGCGCCCGCAACGCGCTCAAGCAGCCGCAGAAGAAGATCGGCAACCGCATGACCGCGTGCCAGCTAGCGTCCATCGGGCCTGTCAGCGGCAGCCAGCCGCAGGCGCTGTCCGTGCTGCCGCCCACGGGGGCGGCCGCGCCTTCGTCGTCGTCGAATTCGGAGTACACGCAGAGGAAGATTTACGTGAGCAACGTTGGAGCGGATCTGGATCCGCATAGGCTTCTCGCGTTTTTCTCGCGGTTCGGGGAGATTGAGGAGGGGCCGTTGGGGCTCGATAAGCTTACGGGAAAACCTAAGGGGTTTTGTTTGTTTGTTTACAGGAGTGGGGAGAGTGCCAGGAGAGCGTTGGAAGAGCCTCATAAGGATTTCGAAGGCCACATTTTGCATTGCCAGAAGGCAATTGATGGCCCCAAGTCCGGGAAGTTTCAGCAGCAGCAGCAGCATCACGGGAATGTGAATGCTCAGGCCCAGCGGCAGCAGTTTCAGAGGAATGATAGTATTGGTGCTAATGCTGCTGCGGGCTATGCTGCGGCGGCGCAGCCAGGGCATTTGATGGCCCCGGCTGGGCCGGGGATGGGGTTTGGTCAGCCGGCTGCTGCACAGGCCGCGTTGAATCCGGCGATGGCGCAGGCACTGACGGCCCTTCTGGCGTCGCAGGGGACGTTGGGGCTGACGAATTTGTTGGGGAGTATTGGGACGAGTGCTGGGGTGAATCCTGGTGTGCATTCTGCTGGGGCTGCTGTGCAGGGTGGTTACAGTGCTCAGTCGAATATAAGTCCTGGTGTTGTTGGAGGATATGGGAATCAGGTGGGGTTGCAGGTGGCGTATCCGAATCAGAATCAGCAGTTAGGGCAGGGTGGCTCTGGAAGAGGGCAATATAGTGGTGGTGGTGGTGCGCCCTACATCGGGCACTAG	1479	0.5896	MPMGRKRKAAPKSSQSAEPPLKHHQPEPEHASPEYEEVEEEVEEEEEVEEEVEEVEEEEEVEEEEEEEEDDNDDKEQQQLLQLQQQDEDDEDDPISKLLEPLSKDQILNLLCEASAKHRDVADRIRKAADEDPAHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSGSQPQALSVLPPTGAAAPSSSSNSEYTQRKIYVSNVGADLDPHRLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRSGESARRALEEPHKDFEGHILHCQKAIDGPKSGKFQQQQQHHGNVNAQAQRQQFQRNDSIGANAAAGYAAAAQPGHLMAPAGPGMGFGQPAAAQAALNPAMAQALTALLASQGTLGLTNLLGSIGTSAGVNPGVHSAGAAVQGGYSAQSNISPGVVGGYGNQVGLQVAYPNQNQQLGQGGSGRGQYSGGGGAPYIGH	492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g1174	492	CDD	RRM_RBM24_RBM38_like	246	321	-	-
	Aed7g1174	492	PANTHER	-	17	492	-	-
	Aed7g1174	492	SUPERFAMILY	RNA-binding domain, RBD	133	216	IPR035979	GO:0003676
	Aed7g1174	492	Coils	Coil	35	81	-	-
	Aed7g1174	492	PANTHER	GEO13361P1-RELATED	17	492	-	-
	Aed7g1174	492	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	136	213	IPR000504	GO:0003723
	Aed7g1174	492	MobiDBLite	consensus disorder prediction	469	492	-	-
	Aed7g1174	492	SUPERFAMILY	RNA-binding domain, RBD	235	341	IPR035979	GO:0003676
	Aed7g1174	492	MobiDBLite	consensus disorder prediction	33	75	-	-
	Aed7g1174	492	MobiDBLite	consensus disorder prediction	324	346	-	-
	Aed7g1174	492	MobiDBLite	consensus disorder prediction	326	346	-	-
	Aed7g1174	492	MobiDBLite	consensus disorder prediction	1	78	-	-
	Aed7g1174	492	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	246	322	IPR000504	GO:0003723
	Aed7g1174	492	Gene3D	-	32	215	IPR012677	-
	Aed7g1174	492	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	138	204	IPR000504	GO:0003723
	Aed7g1174	492	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	248	315	IPR000504	GO:0003723
	Aed7g1174	492	SMART	rrm1_1	137	209	IPR000504	GO:0003723
	Aed7g1174	492	SMART	rrm1_1	247	319	IPR000504	GO:0003723
	Aed7g1174	492	Gene3D	-	231	359	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g1174	Aed-Chr7	9323061	9329764	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g1174	233	331	C2H2 Transcription Factor Family	AT2G19380	35.000	1.80e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g1174	K12741		-	gmx:100784200	623.239