Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1172 ATGTACACAAAGAAGTTTTCACCGGCTAGCATGGTGCCGCATAAATCTCAAGGTGGTGCTGAACAACTTGCAAATGTTGGGGTTTTGGGTGGATCTGCTGTAAAAAATGCTGCTGCACCTGCTGGGGGAGGTGGGAAGCAACGTTTACGGTGGACATCTGATCTTCATGACCGTTTTGTGGAGGCCATTACACAACTTGGTGGACCAGATAGTGGGAAAGAGAATGCAATATATGGGAATCAATTGCTTGTCTCATTTTCAAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCTCCAGCTGATGGTAAAGACTCTAAAGATGAGAAAAAGAATTCTGGAGACAGCATTTCTGGTGCAGATTCTTCCCCGTGGGTATTGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATATTTGCAAAAGATCATTGAAGAGCAGCAGAAATTAGGCAGTACCTTGACAACCTCGGAAACACTCCCTTTGTCCCATGACAAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGGTGCCCTTGCCAGCACTTTGTCTCCACATAAAAAACAGAGAATCGATGATGGTTCCAAGGACGGCTTCACGGCTTCCCAAGTAAGAAAGACTGCCAAAGAATGA 792 0.4419 MYTKKFSPASMVPHKSQGGAEQLANVGVLGGSAVKNAAAPAGGGGKQRLRWTSDLHDRFVEAITQLGGPDSGKENAIYGNQLLVSFSRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKKNSGDSISGADSSPWVLGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKQNHPQSEASGSSGALASTLSPHKKQRIDDGSKDGFTASQVRKTAKE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1172 263 Pfam MYB-CC type transfactor, LHEQLE motif 154 200 IPR025756 -
Aed7g1172 263 PANTHER OS05G0491500 PROTEIN 88 254 - -
Aed7g1172 263 Gene3D - 45 121 - -
Aed7g1172 263 PANTHER OS05G0491500 PROTEIN 2 73 - -
Aed7g1172 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 73 IPR044848 GO:0003700
Aed7g1172 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 88 254 IPR044848 GO:0003700
Aed7g1172 263 MobiDBLite consensus disorder prediction 123 150 - -
Aed7g1172 263 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 118 IPR006447 GO:0003677
Aed7g1172 263 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 71 IPR006447 GO:0003677
Aed7g1172 263 MobiDBLite consensus disorder prediction 123 140 - -
Aed7g1172 263 Coils Coil 157 177 - -
Aed7g1172 263 MobiDBLite consensus disorder prediction 211 263 - -
Aed7g1172 263 SUPERFAMILY Homeodomain-like 46 117 IPR009057 -
Aed7g1172 263 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1172 Aed-Chr7 9311028 9314527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1172 27 246 G2-like Transcription Factor Family AT3G13040 39.916 6.40e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed7g1172 Myb_CC_LHEQLE 8.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1172 - - gmx:100783132 393.275