Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1128 ATGGCCTCTCCCATCCCTCAATGGTTACTTTTGGCTATTATGATTGTTACATTTTTCAATTCAAGCCTTAGTTTCGCAAAGCAATCTAAGATGAATGACTTGAAAATAAATGTTATTAATCGATGTTGGAGACCAGATCTTGAATGGAGGAAGCATCGATCCCAATTAGCTTCATGTTCTGTCGGCTATGCTGGAAAAATGACAAACAATATAAATAATGACCTTATTTATTATGAAGTTACCGACCTTAATGATGATCCTATAAACCCCAAATTGGGCACCTTGAGATATGGAGCCTATGTGATTCAAGGTAAAGTGTGGATCACATTTCAAAGAGACATGAACATTAAATTAGAGAAACCTCTTCTCATTAGTAGTTTCACTACCATTGATGGTTGGGGTGTTAACCTCAACATTGGTAATAATGCATGTTTAATGATCTTTAAGATTGGTTACCGCTTCAAAGGTTTGGATGAAGATGGTTTACTTGACATAACGCGAGGTTCCACTAATGTGACTATATCTAATAATTGGTTCAAAAATCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGGGACCAAAACATGAAGGTTACTGTTGTGATTCATCATGGATATGCACATGTGGCCAACAATTTTTACCAAAAATGGGTGCAATATGCCATTGGCAGAAGCATGAAACCTAGCCTCAAAAGCGAAGCTAACCTTTTCATAGCACCAACAATAAGGAATAAGGAGGTGACATGGAGAAAGAGTAGTAATACAAATGGAGATAGATGGAAATTTCATTTTGTAAGAGATGCTTTTGAAAATGGAGTATCCTTTGCAATAACAAAAGGAGAATGTGTGCCAAAGCCAAATTATAACAAATAA 885 0.3627 MASPIPQWLLLAIMIVTFFNSSLSFAKQSKMNDLKINVINRCWRPDLEWRKHRSQLASCSVGYAGKMTNNINNDLIYYEVTDLNDDPINPKLGTLRYGAYVIQGKVWITFQRDMNIKLEKPLLISSFTTIDGWGVNLNIGNNACLMIFKIGYRFKGLDEDGLLDITRGSTNVTISNNWFKNQDKVMLLGHDDGYVRDQNMKVTVVIHHGYAHVANNFYQKWVQYAIGRSMKPSLKSEANLFIAPTIRNKEVTWRKSSNTNGDRWKFHFVRDAFENGVSFAITKGECVPKPNYNK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1128 294 Gene3D - 36 150 IPR012334 -
Aed7g1128 294 Gene3D - 151 294 IPR012334 -
Aed7g1128 294 SMART amb_all 113 247 IPR002022 -
Aed7g1128 294 SUPERFAMILY Pectin lyase-like 58 279 IPR011050 -
Aed7g1128 294 PANTHER PECTATE LYASE 18-RELATED 159 294 IPR045032 GO:0030570
Aed7g1128 294 PANTHER PECTATE LYASE 18-RELATED 10 150 IPR045032 GO:0030570
Aed7g1128 294 PANTHER PECTATE LYASE 159 294 - -
Aed7g1128 294 PANTHER PECTATE LYASE 10 150 - -
Aed7g1128 294 Pfam Pectate lyase 158 241 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1128 Aed-Chr7 8924749 8926262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1128 67 251 Polysaccharide Lyase AT5G09280 46.774 3.56e-71 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1128 K01728 - gmx:100811216 372.859