Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1087 ATGGCGGAAGAGCGATTCAGCGGCGTAGTGCAGTGGTTCAACAATGGCAAGGGCTTCGGCTTCATCAAGCCCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGTCTTCCATCAGATCCGACGGCTACCGCACCCTCCTCGAGGGCGATCGCGTCGAGTTCGCCATCGCCACCGGCGACAACGACAAGACCAAGGCCGTCGACGTTACCGGCGTCGATGGTGCCCCTCTCCAACCCCAGCCCCGCGCCGCCGCCAACAACAACAGTCGCACCGGCTTCGGTTTCGGCGCCAGGCGCAATGGCGGCGGCGCCGCGTGCTACCAGTGCGGTGATTTCGGCCACCTCGCTAGGGATTGCAACCGGAGCAGCAATTCTGGCGGCGGCGGCAGCGGCGGCGGGTGTTATACTTGCGGCGGGTTAGGCCATCTCGCGAGGGATTGCATGCGCGGTGGCGGCAATGTCGGTGGTGGTGGCATGGGTAGCGGAAGCGGATCTTGCTTCAGGTGTGGCGGGTTTGGACACATGGCGAGGGACTGTGCCACCGCGAAGGGTAACACTGGCGGCGGCGGAGGCAGCGGCGGCGGATGTTTTAAGTGTGGGGAGTTTTGGGGTGGAAGAAATACATGA 627 0.6427 MAEERFSGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGVDGAPLQPQPRAAANNNSRTGFGFGARRNGGGAACYQCGDFGHLARDCNRSSNSGGGGSGGGCYTCGGLGHLARDCMRGGGNVGGGGMGSGSGSCFRCGGFGHMARDCATAKGNTGGGGGSGGGCFKCGEFWGGRNT 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1087 208 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Aed7g1087 208 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 95 - -
Aed7g1087 208 PANTHER COLD SHOCK DOMAIN PROTEIN 2 95 148 - -
Aed7g1087 208 Gene3D - 1 83 IPR012340 -
Aed7g1087 208 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Aed7g1087 208 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Aed7g1087 208 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Aed7g1087 208 ProSiteProfiles Zinc finger CCHC-type profile. 166 179 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Aed7g1087 208 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Aed7g1087 208 Gene3D - 103 155 - -
Aed7g1087 208 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 Pfam Zinc knuckle 133 148 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Aed7g1087 208 Gene3D - 159 203 - -
Aed7g1087 208 SUPERFAMILY Retrovirus zinc finger-like domains 96 149 IPR036875 GO:0003676|GO:0008270
Aed7g1087 208 PANTHER COLD SHOCK DOMAIN PROTEIN 2 123 202 - -
Aed7g1087 208 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Aed7g1087 208 PANTHER COLD SHOCK PROTEIN 2 1 95 - -
Aed7g1087 208 PANTHER COLD SHOCK PROTEIN 2 123 202 - -
Aed7g1087 208 PANTHER COLD SHOCK PROTEIN 2 95 148 - -
Aed7g1087 208 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 SMART csp_8 7 72 IPR011129 GO:0003676
Aed7g1087 208 ProSiteProfiles Zinc finger CCHC-type profile. 134 147 IPR001878 GO:0003676|GO:0008270
Aed7g1087 208 SUPERFAMILY Retrovirus zinc finger-like domains 155 185 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1087 Aed-Chr7 8537722 8540354 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aed7g1087 CSD 2.1e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1087 K09250 - gmx:106796585 305.064