Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1069 ATGAGAACTCGAAACGCCGATTCCGCTTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGCGGAAATCCCCTGCGGCCAAGCGCACCACCGCCACTAAAACCAGAGTCATTAAGAAGAACGAGCTCTCGCCCGCCGCACCCGATTCCAACCCCAATCATTCTTCTTTGGAGCAGAAAACGTTAAGCAGTGCTAGCAGTGCAGAATCCGTGAAAAAGAAGACTCCAGGGAGACCAAGAAGTAAAGCAATTGATACATCGAATTTGGAAGCACAATGTGAGGCAGTAGCTGATGAAACTCTGATTGAAGATGATACTGAGGCAGCAGAGAAAGTGGAAGATGTTGAAGTGCTTGATGCAGATAATGTTGGGGTTAAGAAGGAGGGGGAATGCGGTGTTGGCTCTGTTGGATTGTCTGATGAGACGGATAGTAAGGCGATGGAAGTGGATGAGCCTGTTGTTGAAAGGGTTTGTGAATCTGTGGAAAAGGGAAATGATGCAATGGAAGTTGAAGTGGCTGCTTCGCAGGATGCTTCTGTTTCTTTCAAGCGACCAGGGCGACCCATTATGGATCTCAATATATCTGCAGATAATGAAGATTGTACTGGTGAGAAGGAGGGAGAGAAAGGAAAGGAAGATTTGGAAGAACAGAAAGGTGATGAAGGGAAGGAAGAGGTGAAGGAGCTGGAAGGAGATGAAGGGAAGGAAGAGATGAAGGAACTGGATGGAGAGAAAGGTAAGGAAGAGTTGAAAGAACTGGATGGAGAGAAAGGTAAGGAAGAATTGAAAGAACACGGAGAGAAAGGTAAGGAAGAGTTGAAAGAACAGGAAGTAGAGAAAGATAAGGAAGAGTGGACAGAACTGGAAGGACAGAAAGGAAAGGATGAGTTAAAACAACAGGAAGGAGATGAAGGAAAGGAAAAGTTGAAAGAGCAGGAGCCTGAGAAAGTAAAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACCAAGTTTATTGGTGTAGAAGTGAAGGCCCAGATGCAAAAAGAAGATGCTAATCCCAGTAAAGATGGTGGTGAAGGACCAAAGAGTGATGAAAAGTCAGATGTTGGAGAACAGGGGAGGGTGAAGCTTGTTGAAGAGGATCCGGAAGAAGATCCGGAGGAACCGTCAGAAGAAACTTTAGCATTGGATGAGGAGCATAGGGAATTGGAGGCTATTGCAAATCAGAGAAAGATTAAAAAAGAACATGAGATTTTTGTTGGTGGATTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGATATAGTTGAAGTCAGGTTGCATAAGAATTCTTCCACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCAAAGAAAGCATTATCTGATATGAAGAACCCTGTTATACATGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAACGACACATTATTCTTGGGAAATATTTGCAATACTTGGACCAAAGAAGCTATTAAACAGAAGCTTAAGGATTATGGTGTTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGCTTTGTATTTCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCCGATGTTATCTTCGGCCATGCTGAGCGAACAGCTAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGACGAAGATCATGTGAGGGAGCTGTTTAAATCTTATGGTGAAATTGTAAGAATTGTGCTAGCAAGGAATATGTCTTCAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTAATCACGAAGCTGCTGTAGCTTGTGTTGATGGCGTAAATAAATCAGAATTGGGTGATGGTGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTCTGCCTAAAACACAGGCTGTCAAAGGCGGTATGTGTGGTGGGTTCCGAATAGGTCATGCTAGGAGTGGAACCTTTTCAAGATCAGGAAGGGGTTTTGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGGTAGGGGTTTCTATCATGGTGGACATAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCTTGATTTTAGTATACATCCGGATTTCGGTCAAAGGCAATTTGGTCAACAAGGAGCTGTGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGGCCATCTAGACCTCATCATGATAGAGCATGGTATGGTATCCCTGACAGTGGCCCTAGTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCGGGTGGACATTTTGACATGCCTTTTATGGGAAGGCATTTTGATGATCCATATCTATACGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGATCCTGAACCTGATTACATGGGGCCTAATAGACTACGTCCCCGATTGGATTATGCAGATCCACCTATGTATCATGGAACTCATCACCATGATTCTTTTGGGGCTGGCAGCCGACAGTACCCGCCTGACTATTACAGTTCTGATTATGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGCCATGGATACTATTACTAG 2721 0.4458 MRTRNADSASKSATPKKTPPRKSPAAKRTTATKTRVIKKNELSPAAPDSNPNHSSLEQKTLSSASSAESVKKKTPGRPRSKAIDTSNLEAQCEAVADETLIEDDTEAAEKVEDVEVLDADNVGVKKEGECGVGSVGLSDETDSKAMEVDEPVVERVCESVEKGNDAMEVEVAASQDASVSFKRPGRPIMDLNISADNEDCTGEKEGEKGKEDLEEQKGDEGKEEVKELEGDEGKEEMKELDGEKGKEELKELDGEKGKEELKEHGEKGKEELKEQEVEKDKEEWTELEGQKGKDELKQQEGDEGKEKLKEQEPEKVKGEETNLFGHEENTKFIGVEVKAQMQKEDANPSKDGGEGPKSDEKSDVGEQGRVKLVEEDPEEDPEEPSEETLALDEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGDIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSDMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDVQHEGLSRGFVFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSSAKRKDYGFVDFSNHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSGTFSRSGRGFGRGRQPFNNRGNFNRGRGFYHGGHSQIGRMGFRDDLDFSIHPDFGQRQFGQQGAVRGGHYAGSRGAAFAGPSRPHHDRAWYGIPDSGPSEPIPPRRPYSPGGHFDMPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPMYHGTHHHDSFGAGSRQYPPDYYSSDYGRGSYSSYYGGDGSHGHGYYY 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1069 906 Coils Coil 258 278 - -
Aed7g1069 906 SUPERFAMILY RNA-binding domain, RBD 589 766 IPR035979 GO:0003676
Aed7g1069 906 MobiDBLite consensus disorder prediction 343 375 - -
Aed7g1069 906 MobiDBLite consensus disorder prediction 173 389 - -
Aed7g1069 906 MobiDBLite consensus disorder prediction 127 150 - -
Aed7g1069 906 SMART rrm1_1 492 569 IPR000504 GO:0003723
Aed7g1069 906 SMART rrm1_1 412 485 IPR000504 GO:0003723
Aed7g1069 906 SMART rrm1_1 590 665 IPR000504 GO:0003723
Aed7g1069 906 MobiDBLite consensus disorder prediction 197 326 - -
Aed7g1069 906 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 493 561 IPR000504 GO:0003723
Aed7g1069 906 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 413 481 IPR000504 GO:0003723
Aed7g1069 906 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 591 657 IPR000504 GO:0003723
Aed7g1069 906 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 411 489 IPR000504 GO:0003723
Aed7g1069 906 CDD RRM_SF 493 556 - -
Aed7g1069 906 MobiDBLite consensus disorder prediction 1 114 - -
Aed7g1069 906 CDD RRM_SF 413 481 - -
Aed7g1069 906 MobiDBLite consensus disorder prediction 697 718 - -
Aed7g1069 906 MobiDBLite consensus disorder prediction 45 70 - -
Aed7g1069 906 MobiDBLite consensus disorder prediction 96 111 - -
Aed7g1069 906 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 294 899 - -
Aed7g1069 906 PANTHER NUCLEOLIN-LIKE ISOFORM X1 294 899 - -
Aed7g1069 906 CDD RRM_SF 591 665 - -
Aed7g1069 906 SUPERFAMILY RNA-binding domain, RBD 412 556 IPR035979 GO:0003676
Aed7g1069 906 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 491 576 IPR000504 GO:0003723
Aed7g1069 906 Gene3D - 335 485 IPR012677 -
Aed7g1069 906 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 589 669 IPR000504 GO:0003723
Aed7g1069 906 Gene3D - 578 731 IPR012677 -
Aed7g1069 906 Gene3D - 490 575 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1069 Aed-Chr7 8377666 8384199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1069 413 657 Eukaryotic Initiation Factors Gene Family AT2G23350 24.206 2.94e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1069 - - gmx:100784338 1065.06