Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1057 ATGCTTTACCAAACTCACCATCCTCCACTCTTTCTTCAATTTCATCCCTTCACTTCTTCCACCACGCCTCACCTTCCATCATATTCATCTTTTCTTCTCTCTCAGGCGGAGAAAGAAATGGAGTGTTTGGAAGCAGCGTTGAAGAGCAGCAGTTTCAGGAAAGACATGGCTTTGAAACTCAGCAGCCCACAAACGTTGTTCCTTGAGGAGTTTTCTTCCGCGTTTAACGTTCAAAACGTCGTCGCTTCCTCCGACGACTTCTTCGTTGACGACCTCCTCGACTTTTCGCTCCTCGAAAACAACAAAGAAGAACCCGACCAACACAACCACGACTCAACAACCCCTCAGAACAACCAGGAAAATTACAATTATAACCCCTCCTTCGACGACAACAATTTCAACAGCGAACTCACTGTTCCGGCGGAGGAGGAAGTTGCGGACTTGGAATGGGTGTCTCATTTCGTCGAAGATTCTAATTTCTCCGAATATTCTCTTCCCTTCCCTGCAACCGTAACGGAGAAAGTGAAGCCACCGGAACCGGGAAATACTGGTTTCACTTTTCAAACCCCGGTTCCGGCGAAGGCGAGGAGCAAGAGAACGCGAACCGGAGTCAGGGTTTGGCCGCTCAAGTCGCCGTCTTTCACCGCCACGTCATCAACCTCTTCCTCGTCCTCGTCATCACCCTCCTCGAGCCCCACTCTGCTAACGTGCGCGGACCCGAGACCCAAGAAGCGCGCCGCCGCGGACGGCGGTGCGGCGCGGAGGTGCAGCCACTGTGGCGTTCAGAAAACCCCTCAGTGGCGAACGGGACCGCTCGGGGCGAAGACTCTGTGCAACGCGTGTGGGGTCCGCTACAAGTCGGGTCGGTTATTACCCGAATACAGACCCGCGTGTAGCCCTACTTTCTCCACCGAGCTGCACTCGAACCACCACCGGAAGGTTCTTGAGATGCGGCGGAAGAAGGAGGAGGAGGTGGTCGCACCTGAACCGGCCACCACTTCGCCGCCGTCGCTTCCCGGTTTTTGA 1026 0.5458 MLYQTHHPPLFLQFHPFTSSTTPHLPSYSSFLLSQAEKEMECLEAALKSSSFRKDMALKLSSPQTLFLEEFSSAFNVQNVVASSDDFFVDDLLDFSLLENNKEEPDQHNHDSTTPQNNQENYNYNPSFDDNNFNSELTVPAEEEVADLEWVSHFVEDSNFSEYSLPFPATVTEKVKPPEPGNTGFTFQTPVPAKARSKRTRTGVRVWPLKSPSFTATSSTSSSSSSSPSSSPTLLTCADPRPKKRAAADGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRKKEEEVVAPEPATTSPPSLPGF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1057 341 SMART GATA_3 250 304 IPR000679 GO:0006355|GO:0043565
Aed7g1057 341 Coils Coil 33 53 - -
Aed7g1057 341 Gene3D - 249 324 IPR013088 GO:0006355|GO:0008270
Aed7g1057 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 248 312 - -
Aed7g1057 341 Pfam GATA zinc finger 256 290 IPR000679 GO:0006355|GO:0043565
Aed7g1057 341 MobiDBLite consensus disorder prediction 101 126 - -
Aed7g1057 341 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Aed7g1057 341 CDD ZnF_GATA 256 303 IPR000679 GO:0006355|GO:0043565
Aed7g1057 341 PANTHER GATA TRANSCRIPTION FACTOR 40 329 - -
Aed7g1057 341 MobiDBLite consensus disorder prediction 318 341 - -
Aed7g1057 341 PANTHER GATA TRANSCRIPTION FACTOR 40 329 - -
Aed7g1057 341 MobiDBLite consensus disorder prediction 111 126 - -
Aed7g1057 341 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355|GO:0043565
Aed7g1057 341 MobiDBLite consensus disorder prediction 211 236 - -
Aed7g1057 341 MobiDBLite consensus disorder prediction 175 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1057 Aed-Chr7 8220247 8222998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1057 44 322 C2C2-Gata Transcription Factor Family AT5G66320 46.951 1.41e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed7g1057 GATA 4.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1057 - - gmx:100786449 474.167