Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1017 ATGTCGTTGAGAAGTATAGTCCGTGAACTCAAGGAGATGAGAGATGGAAGAGGCAGCACGTCAAAGCGGGGTGCAGGAAGCAAGCATCGGCTCAGTCGAACAAAGTCACATGTAGCTCCAGATGTTCTTGCAACTCCATTTGAACCTATCCAACAGGGACAATGGGCAAATCTACCATCAGAGTTGCTTTTGGACATAATCCAGAGGGTCGAAGAGAGTGAGGCATCTTGGCCTGCCCGTGCTGTTGTCGTTTTTTGTGCTTCAGTATGTAAATCATGGAGATCCATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCGGGTCCACGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAAAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTTCCATCAGAAAATGACAGTAATAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGGGCAACAGGCACCGGCTTTGTCATATCCTTGGTTGCGGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGGCAATTCACCATATATGACAGTCAAGCTCCACATGATTCTGCAATTCAACCAAATTGTCAATCTAGTAGGAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAGCTATCTTGTTAGCACTGTTTCCTACGAGCTGAATGTCCTCTGCACTAGAGGGCCAAGAAGAATGCATTGTGTCATGAACTCTATACCCATCTCTGCTATTCAGGAAGGGGGCAACGCCCCAACTCCAACATCTTTCCCTCAAATATTTGATGAACCTTTTTCTCCATCACCAACACTGAAAGGAAAAGTTCCAGTCACAGATTTAAACTCCGCCAGCTTATCAGAGCCACCGATATTGAGCCAAGGCTCAACTGAGCAATTAGTACTGAAAAACAAGGCTCCCAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGCGTTTCTGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTTATAATATTTCTGCTGAGGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCATTATCCACTCTCTACCTTCCAAGCCTTTGCCATCTGCTTGAGCTGCTTTGACACTAAACCTGCCTCTGAAAATCATAAGCTGTTGTTCTGCCGTGTTAGTTCCCCCCTTAAAACCCTTAAATTGGTTGCTGATGATTCTGGAATTTATTCTTTGTTGATATTCTTTGCAGATGATGATAACGTTATACTATTTTCTTTTAACAAGAGCTGA 1365 0.4278 MSLRSIVRELKEMRDGRGSTSKRGAGSKHRLSRTKSHVAPDVLATPFEPIQQGQWANLPSELLLDIIQRVEESEASWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKETSTYLLYFGLVPSENDSNKLLLAAKRIRRATGTGFVISLVADDFSRASNKYVGKLRQFTIYDSQAPHDSAIQPNCQSSRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPISAIQEGGNAPTPTSFPQIFDEPFSPSPTLKGKVPVTDLNSASLSEPPILSQGSTEQLVLKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSYNISAEEQEKVILQFGKIGKDIFTMDYHYPLSTFQAFAICLSCFDTKPASENHKLLFCRVSSPLKTLKLVADDSGIYSLLIFFADDDNVILFSFNKS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1017 454 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Aed7g1017 454 Gene3D - 48 101 - -
Aed7g1017 454 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Aed7g1017 454 PRINTS Tubby superfamily signature 336 352 IPR000007 -
Aed7g1017 454 PRINTS Tubby superfamily signature 365 384 IPR000007 -
Aed7g1017 454 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Aed7g1017 454 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Aed7g1017 454 PRINTS Tubby superfamily signature 318 335 IPR000007 -
Aed7g1017 454 PRINTS Tubby superfamily signature 386 408 IPR000007 -
Aed7g1017 454 MobiDBLite consensus disorder prediction 12 35 - -
Aed7g1017 454 Pfam F-box domain 55 102 IPR001810 GO:0005515
Aed7g1017 454 Pfam Tub family 116 403 IPR000007 -
Aed7g1017 454 Gene3D Tubby Protein; Chain A 113 408 IPR025659 -
Aed7g1017 454 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 407 - -
Aed7g1017 454 SUPERFAMILY Tubby C-terminal domain-like 104 407 IPR025659 -
Aed7g1017 454 ProSitePatterns Tub family signature 1. 336 349 IPR018066 -
Aed7g1017 454 PANTHER TUBBY-RELATED 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1017 Aed-Chr7 7816096 7819672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1017 1 409 TUB Transcription Factor Family AT2G18280 60.952 1.87e-174 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed7g1017 Tub 6.5e-96 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1017 K19600 - gmx:100805380 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1285 11 17869259 17871851 Aed7g1017 7 7816096 7819672 PCT