Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1015 ATGGGAACTGATAGCGGTGAACCGGCAGAGACATTACCAAATCCTCGCTCCTTTAAGGTACATCGTACAATGTGCACAGAACTCAGGAAATTAGTTGACAAAATCTTGTGGATAATTCCAAAGATAGAAGAAGCACGCCCTTGCGGAATGCAGGCTCTATGTTTGCTGAACAAAGAAATTGATAAAGCCAAACAACTCTTGCTATACTGCTCCGAATCTAGTAAACTCTACCTGTCAATAACAGGGGATTCCATACTCTTAAAATTCCAGAAGGCAAGAAAATCGTTAGCGAAAAGCTTAGTCCAGATTCTGAATATGGTTCCAGTTATGTTGGCCGCAGAGATTTCTCGACTAATTGGTGATCTTGAGTGTGTAACATTTGTCTTCAACTCTGCTGAAGAAGCAGCTGCGAAGGTTTTGAAGCAATTGGTCCAGCCAGATCCTTCAGCATCAGATAAAGATTCAATGGAGGAATCTCAATTAAAAGATTTTCAGTTTGTAGCAGCAAGACTTGGTATTACATCCTCAGCAGCCATCTTAATAGAGAAGCGATCTATTCAGAGGTTGCTAGGAAAAGTCAATCCCAATGACCAGATGAAAGAGATTGTCTTGAAAAATCTTTTGATTCTCCTTGTAAAGCACCGAAAATCAATCACGGGAGAACAAATGGAGGTCTATTCTCAAAGTGAAGGACCAATCACAACTGAGAACTCAGGTCATGAGTCTCAAAAAATCCTTCATGTCAAGTCAGACCCATACACGAACCATGTTCAGTATAGAACTCATGCCAGTGAGTTGGGTAGACCTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAAAAACATATGAAAGGATGTGGATATTAAAGTGGTTTGATGAGGGTAATACCACATGCCCAAAAACTAAAGAGGAACTGGCTCATATGGCATTGACTCCAAACGTTGCCTTAAAGGACTTAATATTAAAGTGGTGTGAAGCTAATGGAGTCTCCATTCCTGACCCAAGAAGGCAAACACAAGATTTGCACTCATGGGAAGTTTCCTCCGATTCCATTAGGAGTTTTGGAAGTTCTTTGTATGATTTGAACTTCCAAATGGATCTTAGTAACGTATCTCTTGGATCATTAGATACCAGTTATAATTCAGATTCCTCCCACACTAAGGCCAATCATAGCTTAAATTTGATGTTGAACAAGAGCAGTGGCAATTCTCGCAAGCATCAATCTCGTGCATGGATACATGACGCTGATCTGATGCATTTGTCTAAACTCCATGAACGTCAATGGAAATCTCAATGCCAAGTCATTGAAGATATGAAAATAGATTTCCAATGCAATTACCAAGCTTTTTGCTCTGTGCCATCTGAGAATTTCATTGATCCACTCACGAGATTTCTGAGAACTGCTTGTGAGAGGCATGATGTAAAAGCTCTAAGAGCGGGGATTAAGTTGCTATTAGAATTTATGAAGTGCTGCAGTGAAGATACATGCATTGTGTTGGCAAGTCTTCTTGACACAGAAGTGATTGATGAAGCTCTCACCATAATGGAAGAACTGACAGGGAATTGGTTTGAAAAGGCTAGCATTGCAGCTTCCAGTGTACTCACTTCTGTTTCAAAGATCCTTGATTCAGGTAATGAAGAGTTCCAACGGAAAGCTATTAAAATAATGTATAATTTTTCATCCAATGCTCAAATTTGTCCCTACATGATATCTCTCGGGTGCATCCCAAAGTTACTGCCATTTTTTGAAGACAGAACCCTTTTGAGAGACTGTATACATATTTTGAAAAACCTTTGTGATACTGAAGAGGGTAGAGTTACTGTTGTTGAAACAAAAGGATGCATAGCTTCTGTTGTTGAAATACTTGGGACTGGAAGTGATGAGGAAAAAGAACCTGCACTGGTTATTCTTCTCTCTTTATGCTCTCAACGTGTGGAATACTGTCAGTTTGTTATGTATGAGGGGATTATTCCTTCTCTTGTCAACATCTCCAAAAAAGGAAGTGATATGGCAAAGGCTTATGCACTCGAACTACTCCGGCTTTTGAAGGACATTAACCAGTTTGAGTATGAAGATTGTTGTGAGCCAAATCTCATTGCCTCTCAAGAACCTAACAATCACTATCAAGAAAAGAAACCATCAAAGAAATCGACAATTTTGAAGAAACTGTCACTCTTCTCAAAATCCAGTTCAGTTGCACCAAAGCCCAAGAGATGA 2259 0.3971 MGTDSGEPAETLPNPRSFKVHRTMCTELRKLVDKILWIIPKIEEARPCGMQALCLLNKEIDKAKQLLLYCSESSKLYLSITGDSILLKFQKARKSLAKSLVQILNMVPVMLAAEISRLIGDLECVTFVFNSAEEAAAKVLKQLVQPDPSASDKDSMEESQLKDFQFVAARLGITSSAAILIEKRSIQRLLGKVNPNDQMKEIVLKNLLILLVKHRKSITGEQMEVYSQSEGPITTENSGHESQKILHVKSDPYTNHVQYRTHASELGRPTPPEEYTCPISLRLMYDPVVIASGKTYERMWILKWFDEGNTTCPKTKEELAHMALTPNVALKDLILKWCEANGVSIPDPRRQTQDLHSWEVSSDSIRSFGSSLYDLNFQMDLSNVSLGSLDTSYNSDSSHTKANHSLNLMLNKSSGNSRKHQSRAWIHDADLMHLSKLHERQWKSQCQVIEDMKIDFQCNYQAFCSVPSENFIDPLTRFLRTACERHDVKALRAGIKLLLEFMKCCSEDTCIVLASLLDTEVIDEALTIMEELTGNWFEKASIAASSVLTSVSKILDSGNEEFQRKAIKIMYNFSSNAQICPYMISLGCIPKLLPFFEDRTLLRDCIHILKNLCDTEEGRVTVVETKGCIASVVEILGTGSDEEKEPALVILLSLCSQRVEYCQFVMYEGIIPSLVNISKKGSDMAKAYALELLRLLKDINQFEYEDCCEPNLIASQEPNNHYQEKKPSKKSTILKKLSLFSKSSSVAPKPKR 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1015 752 CDD RING-Ubox_PUB 277 317 IPR045210 -
Aed7g1015 752 SUPERFAMILY RING/U-box 262 348 - -
Aed7g1015 752 Gene3D - 381 704 IPR011989 -
Aed7g1015 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Aed7g1015 752 PANTHER U BOX DOMAIN-CONTAINING 2 744 - -
Aed7g1015 752 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 744 - -
Aed7g1015 752 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Aed7g1015 752 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Aed7g1015 752 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Aed7g1015 752 SUPERFAMILY ARM repeat 462 705 IPR016024 -
Aed7g1015 752 SMART arm_5 576 614 IPR000225 GO:0005515
Aed7g1015 752 SMART arm_5 615 656 IPR000225 GO:0005515
Aed7g1015 752 SMART arm_5 658 698 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1015 Aed-Chr7 7806283 7811283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1015 15 706 U-box Gene Family AT4G36550 35.955 2.72e-123 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1015 - - gmx:100798951 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1287 11 17873726 17877280 Aed7g1015 7 7806283 7811283 PCT