Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1004 ATGATGAACCATCGTTGCTGCGGAAGCTCTCAGGAACACGTGATGGGCACGTGCACGTGCGGCATGTACCATAGCGAAACCACCTCTTACGGCGGCTCGATGCTGTTCTCTATGCCCAACGATGAATATTACCAACACGATCACGACATGTATAATTCCTCCTTCACGCCCTCTCCTTCCTCCGTGGACTGCACGCTCTCCCTCGGAACCCCCTCCACGCGCTTAACCCAACAACAACAACAACAAGACGACGACAACAGTAAACGACACCGACACCAACGTCGTTCTGGACTCGCCAATTTTCGCTGGAACATGTTCCAATCTAAACACAACAACACGCAATCTCAAACCAAGTCCAACGCCAACAACGACTCTCTCCTCGCTCGTCGATGCGCCAACTGCGACACCACTTCCACTCCCCTATGGAGGAACGGTCCTCGTGGCCCAAAGTCACTATGCAACGCTTGCGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCGAGCGCTACCGCCCCGACGTCAGAGGCGGTTCCCGGCGGCGCGATGGAGTCTGCGCGCGCGTACGGCCACCACCAGAACAATTCGTGGTACGCGGCACACTCGCAGAGCCACATGATGGGTAGCGAGTTTAGCTTCATGGACGATTCCGAAGATAGAGGAGAGTCGGAGAATATTAATAATGGCATTCCGTTCCTCTCATGGAAACTCAACGTTCCAGATCGAACAAGCCTCGTTCACGACGAGCGATGGTGA 753 0.5432 MMNHRCCGSSQEHVMGTCTCGMYHSETTSYGGSMLFSMPNDEYYQHDHDMYNSSFTPSPSSVDCTLSLGTPSTRLTQQQQQQDDDNSKRHRHQRRSGLANFRWNMFQSKHNNTQSQTKSNANNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASATAPTSEAVPGGAMESARAYGHHQNNSWYAAHSQSHMMGSEFSFMDDSEDRGESENINNGIPFLSWKLNVPDRTSLVHDERW 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1004 250 MobiDBLite consensus disorder prediction 62 95 - -
Aed7g1004 250 PANTHER GATA TRANSCRIPTION FACTOR 18 2 247 - -
Aed7g1004 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 170 - -
Aed7g1004 250 Pfam GATA zinc finger 131 165 IPR000679 GO:0006355|GO:0043565
Aed7g1004 250 CDD ZnF_GATA 130 162 IPR000679 GO:0006355|GO:0043565
Aed7g1004 250 PANTHER GATA TRANSCRIPTION FACTOR 18 2 247 IPR044272 GO:0003700|GO:0009908
Aed7g1004 250 ProSiteProfiles GATA-type zinc finger domain profile. 125 161 IPR000679 GO:0006355|GO:0043565
Aed7g1004 250 SMART GATA_3 125 176 IPR000679 GO:0006355|GO:0043565
Aed7g1004 250 MobiDBLite consensus disorder prediction 62 82 - -
Aed7g1004 250 ProSitePatterns GATA-type zinc finger domain. 131 156 IPR000679 GO:0006355|GO:0043565
Aed7g1004 250 Gene3D - 127 183 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1004 Aed-Chr7 7732347 7733199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1004 19 247 C2C2-Gata Transcription Factor Family AT3G50870 40.767 1.44e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed7g1004 GATA 6.1e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1004 - - gsj:114390318 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1292 11 17911325 17913193 Aed7g1004 7 7732347 7733199 PCT
Aed7g1004 7 7732347 7733199 Aed11g1164 11 17067497 17076039 PCT