Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1003 ATGATGCACCATCGTTGTTGCTGTGGAAGCTCTCAGGGGCACGTGATGGACACGTGCACGTGCGGCATGTACCACAGCGAAACCACCTCTTACGGCGGCTCGATGCTGTTCTCTATGCCACCCAACAACGGCTACGATGAATATTACGAACACGATGAAATGTATAACTCCTCCTTCACGCCCTCTCCTTCCTCCGTGGACTGCACGCTCTCCCTCGGAACCCCCTCCACGCGTTTAACCCAACAACAAAAAGACGACGACCACGACGACATCAATAGTAAACGACACCGCCACCAACGTCGTTCTGAACTCTCCAATTTTCGCTGGAGCATGTTCCAATCTAAACACAACAACACGCAATCTCAAACCAAGTCCAACGACTCTCTCCTCGCTCGTCGTTGCGCCAACTGCGACACCACTTCCACTCCCCTCTGGAGGAACGGTCCTCGTGGCCCAAAGTCACTCTGCAATGCTTGCGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCGAGCGCCGCTGCTGCCGCCGCCACGTCAGCGGTGGTGTCCGGCGGTGCGATGGAGTCGGCTCGCGTGTACGGCCACCACCAGAACAATTCGTGGTACGCGGCAAACTCGCAGAGCCAGAAGATGATGGGTAACGAGTTTCGTTTCATGGACGATTCCGAAGATAGAGGAGAATCGGAGAACATTAATAATGGCATTCCGTTCCTCTCTTGGAAACTCAACGTTCCAGATCGAACAAACCTTGTTCACGACGAGCGATGGTGA 771 0.5396 MMHHRCCCGSSQGHVMDTCTCGMYHSETTSYGGSMLFSMPPNNGYDEYYEHDEMYNSSFTPSPSSVDCTLSLGTPSTRLTQQQKDDDHDDINSKRHRHQRRSELSNFRWSMFQSKHNNTQSQTKSNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAAATSAVVSGGAMESARVYGHHQNNSWYAANSQSQKMMGNEFRFMDDSEDRGESENINNGIPFLSWKLNVPDRTNLVHDERW 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1003 256 PANTHER GATA TRANSCRIPTION FACTOR 18 2 253 IPR044272 GO:0003700|GO:0009908
Aed7g1003 256 CDD ZnF_GATA 133 165 IPR000679 GO:0006355|GO:0043565
Aed7g1003 256 Gene3D - 130 210 IPR013088 GO:0006355|GO:0008270
Aed7g1003 256 Pfam GATA zinc finger 134 168 IPR000679 GO:0006355|GO:0043565
Aed7g1003 256 MobiDBLite consensus disorder prediction 70 103 - -
Aed7g1003 256 SMART GATA_3 128 180 IPR000679 GO:0006355|GO:0043565
Aed7g1003 256 PANTHER GATA TRANSCRIPTION FACTOR 18 2 253 - -
Aed7g1003 256 MobiDBLite consensus disorder prediction 81 97 - -
Aed7g1003 256 ProSitePatterns GATA-type zinc finger domain. 134 159 IPR000679 GO:0006355|GO:0043565
Aed7g1003 256 ProSiteProfiles GATA-type zinc finger domain profile. 128 164 IPR000679 GO:0006355|GO:0043565
Aed7g1003 256 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1003 Aed-Chr7 7723585 7724535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1003 10 253 C2C2-Gata Transcription Factor Family AT3G50870 40.066 6.90e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed7g1003 GATA 6.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1003 - - gsj:114390318 364.385