Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0989 ATGCCGGTTGATTTGGACAACGCTTCCACACCTTCAGGGGAAGCTAGCGCCAGCGTGTCTTCCTCCGGCAATCAAACAAAACCCGCCGCAAAGAAAAAACGCAACCTCCCCGGCATGCCAGATCCGGAGGCGGAGGTGATTGCTCTGTCGCCGAAGACGCTGATGGCGACGAACCGGTTCGTGTGCGAGATATGCAGCAAGGGGTTCCAGAGGGACCAGAACCTGCAGCTTCATCGGCGGGGCCACAACCTGCCGTGGAAGCTGAAGCAAAGGTCGAGCAAGGAGGTGAGGAAGAGAGTGTACGTGTGCCCCGAGGCCACGTGCGTGCACCACGACCCTTCTAGAGCGTTGGGGGACTTGACCGGGATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTACGCTGTTCAGTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACCAGAGAGTATAAGTGCGATTGCGGAACCGTTTTCTCCAGGAGGGATAGCTTCATCACGCATAGGGCGTTTTGCGATGCGTTGGCGGTGGAGAGTGCGAGATCTCAGACTGTTGTAAAAGATAATACTAATTCGGAGAACGATTCAAAGGTTTTAGCCACTGATTCGCCGCCGCCCGCTGCGGCGGCTACTACTACTGCTACTACACAGTCAAATAGTGTTATGTCCTCTGGTTTGCAGACGCAGAGCCTAGAGTTACCAGAAAATAATCCTCCACAAATCATTGAGGAGCCGCAAGCTGCTGCTACAAGTGGGAGCTGTGGCAGCAGCACCTGCTCAACAAGCAATGGTGGTGCAACTAGCAATAGTAACAGTAGTAGTAGTGTGTTTGCGAGTTTGTTTGCTTCTTCAACAGCATCTGGGACCCTACAATCTCAAACATCAGCATTCAGTGACTTAATTAGAGCCATGAGGCCTCTGGAACAACCTGCTGCAGATATCTCAGGTCCTTCATCATCTGAGGCCATATCTCTTTGCCTCTCCACCACCAATGCCTCGCCAATTTTTGCAACAGGAGGAGGCAGGCATTATGCGCCGTCATCATCTTTGCTGCAGCCGGCCATGTCAGCCACTGCATTGCTGCAGAAAGCAGCTCAAATGGGTGCTGCTGCCACAAATGCCTCCCTTCTTCGTGGGTTTGGCATCGTGTCATCATCTTCAGCTTTGCAACAGCAAAATGGCCTGCAATGGGGGCAGCAGCAGTTAGAACCCGAGAGTGGCGCAGTTCCTGCAGGGCTTGGAATTGGCCTTCCATCTGATGGTGGTTCTGGATTAAAGGAATTGATGATGGGAACACCCTCAGTGTTTGGTCCTAAGCACACCACTCTTGATTTTCTAGGATTGGGGATGGCTTCTGGTGGCACTGCTGGTGGAGGCTTATCTGCACTTATCACATCTATTGGTGGCAGTTTAGATGTAACTGCAGCTGCAGCCTTTGGCAATGGAGATTTTTCTGGCAAAGATATTGGAAGTAGCTCTTGA 1518 0.5224 MPVDLDNASTPSGEASASVSSSGNQTKPAAKKKRNLPGMPDPEAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVRKRVYVCPEATCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAVESARSQTVVKDNTNSENDSKVLATDSPPPAAAATTTATTQSNSVMSSGLQTQSLELPENNPPQIIEEPQAAATSGSCGSSTCSTSNGGATSNSNSSSSVFASLFASSTASGTLQSQTSAFSDLIRAMRPLEQPAADISGPSSSEAISLCLSTTNASPIFATGGGRHYAPSSSLLQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSALQQQNGLQWGQQQLEPESGAVPAGLGIGLPSDGGSGLKELMMGTPSVFGPKHTTLDFLGLGMASGGTAGGGLSALITSIGGSLDVTAAAAFGNGDFSGKDIGSSS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0989 505 SMART c2h2final6 101 131 IPR013087 -
Aed7g0989 505 SMART c2h2final6 136 156 IPR013087 -
Aed7g0989 505 SMART c2h2final6 60 82 IPR013087 -
Aed7g0989 505 MobiDBLite consensus disorder prediction 1 42 - -
Aed7g0989 505 Gene3D Classic Zinc Finger 39 109 - -
Aed7g0989 505 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Aed7g0989 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 503 - -
Aed7g0989 505 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 503 - -
Aed7g0989 505 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Aed7g0989 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Aed7g0989 505 Gene3D Classic Zinc Finger 114 193 - -
Aed7g0989 505 MobiDBLite consensus disorder prediction 195 280 - -
Aed7g0989 505 MobiDBLite consensus disorder prediction 195 211 - -
Aed7g0989 505 MobiDBLite consensus disorder prediction 218 248 - -
Aed7g0989 505 MobiDBLite consensus disorder prediction 9 29 - -
Aed7g0989 505 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Aed7g0989 505 MobiDBLite consensus disorder prediction 255 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0989 Aed-Chr7 7593465 7596997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0989 1 501 IDZ Gene Family AT3G50700 56.719 1.82e-175 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed7g0989 zf-C2H2 0.0087 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0989 K25869 - gmx:100783947 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1321 11 18078242 18082339 Aed7g0989 7 7593465 7596997 PCT