Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0970 ATGGGTTGGTTTACTAAGTTTCTTAAGGGATCCAACCGTGGTAGGTCTTATGGAGGAAAATATCATGGGAAATATGGAGATGACAGAATTTCAGCGGATGATTTGACGGATATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGACGACAGATCAGAAAGGGAAAAAAGTTATTGAGGAGGAGTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGTGATGAGGAAGACGAATGTGTTCATGAAGTTCAGCCAGATGAAGATGACCATCATGCTCAAATTCAACAGGATGAAGACCAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACACTGAATCTTTATTTCAACCTTTTGCACACTTATTCCCACCTGTAAGCAGAATTTGTGCTGGCTGCAATGCCGAGATTGGCCATGGAAGATTTTTGAGCTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGGTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCACCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAGATGTGATGTTTGCAAGAGCTTTATCCCACCAAATTCTGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGCACTCCTCGTTGCTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGTCGAAAGTTGTGTCTGGAGTGTCTTGACTCGGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTTGAAATACAAGAGTTCTATGAAGGTTTACACATGAAGATAGAACAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCTCTGAACGAGGCCATGGAGGGAGAGAAGAATATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGATCCGTCGTTGCGAAGTGACAGCCATACTTGTGTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCATGCATGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGTCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCCGGCACCAGTGATGATGGTGCATCATCATCATCATCATTATCCTCGTCCTCTTCATCACCTTCGTCCTCTTCACCATCGAAGAAGGGTAAACGTTCCGACTTTGAGAAGAAACTTGGTGAGTATTTCAAACACCAGATTGAGTCAGATAGCTCACCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGGCTAAGTATGGACTTAGAAGGACCCTTGACCATATCCAATTGACTGGAAGTTTTCCATATTGA 1512 0.4279 MGWFTKFLKGSNRGRSYGGKYHGKYGDDRISADDLTDIEKEEIDRAIALSLSETTDQKGKKVIEEESESEDDELCPLSDEEDECVHEVQPDEDDHHAQIQQDEDQHLDEVQLEEDEQLARAIQESLSISSPPRSDTESLFQPFAHLFPPVSRICAGCNAEIGHGRFLSCMGGYWHPECFCCHGCKLPITDYEFSMSGNHRYHKSCYKELHHPRCDVCKSFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLESEIIPGTSDDGASSSSSLSSSSSSPSSSSPSKKGKRSDFEKKLGEYFKHQIESDSSPAYGDGFREGNQAVAKYGLRRTLDHIQLTGSFPY 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0970 503 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 113 132 IPR003903 -
Aed7g0970 503 MobiDBLite consensus disorder prediction 54 77 - -
Aed7g0970 503 CDD LIM_DA1 154 206 - -
Aed7g0970 503 Pfam LIM domain 154 208 IPR001781 -
Aed7g0970 503 MobiDBLite consensus disorder prediction 420 445 - -
Aed7g0970 503 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 238 - -
Aed7g0970 503 Gene3D Cysteine Rich Protein 150 213 - -
Aed7g0970 503 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 332 503 - -
Aed7g0970 503 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 331 - -
Aed7g0970 503 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 179 - -
Aed7g0970 503 MobiDBLite consensus disorder prediction 420 451 - -
Aed7g0970 503 Pfam Protein DA1 331 497 IPR022087 -
Aed7g0970 503 PANTHER PROTEIN DA1-RELATED 2 332 503 IPR045218 -
Aed7g0970 503 PANTHER PROTEIN DA1-RELATED 2 1 331 IPR045218 -
Aed7g0970 503 ProSitePatterns LIM zinc-binding domain signature. 154 188 IPR001781 -
Aed7g0970 503 SMART uim 38 57 IPR003903 -
Aed7g0970 503 SMART uim 113 132 IPR003903 -
Aed7g0970 503 SMART lim_4 153 205 IPR001781 -
Aed7g0970 503 ProSiteProfiles LIM domain profile. 152 212 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0970 Aed-Chr7 7418018 7424151 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed7g0970 DA1-like 1.5e-76 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0970 - - gmx:100806605 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1349 11 18269632 18276346 Aed7g0970 7 7418018 7424151 PCT