LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g0888	ATGGCCGATTCTGACACCAATCACAATGACCCATCTCTCTCTACCGATGCTGATGCACCCAATGATGATGCAGAAGAAGAGATCAAGTTGAGGTCTAATGACCAAAGACTGGCTCTTGCAGGTGAGCCCAAGTGTATTATATGTGGCCGCTATGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTATGGAGTGCAAACAAGCACTGCTTTGCAGGATTGCCAAATCGTTGGCTCCACCACCTGAAACGATTCCTGCAGCTGATGTGTGTTTTTATGTTAAAGATGTTGATTATGTATCAGGAACTGCATCAATGACTAGTGGTCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTCCCCGACAAGCTTCTCCACAATATTGAAGCAGCAGGATATGAAATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCCACTTTGACAGGCAAAAGCATGCTTGTTTTGGCTGATACAGGATCTGGGAAGTCTGCTTCATTTCTTATTCCGATAATTTCCCGCTGTGTGATTCATCGTCGACAATATGTTTCTGATAAGAAGAAGCCTTTAGCTATGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAGTTGCTTGGAAAGGGGTTGCCTTTCAAAACTGCTCTTGTGGTTGGTGGTGATGCCATGGCTGGACAACTCCATCGCATTCAACAAGGCGTGGAATTGATTGTAGGAACCCCGGGAAGGCTGGTTGATCTTTTAACGAAGCATGAGATTGAATTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTGTATGATGCAAAGGGGCTTTAGAGATCAGGTCATGCAGATATATACGGCTCTCTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAGATGATTAACACTCTAGCGAAAGGTACGGTGGTTATCTCTGTTGGAGAACCTAATAGACCAAATAAGGCTGTGAAGCAGGTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAAAAGCTGTTTGAAATTTTGGCAAGTGAGAAGCATTTTAACCCACCTGTTGTAGTGTATGTGGGCTCCAGACTTGGGGCAGATCTCCTGGCTAATGCAATTACAGTTGCCACAGGAATTAAAGCAGTTTCAATTCATGGAGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTGGTGGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGGGTTGATCTACTGGGTGTAAGGCAGGTGATTGTATTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAGGTGGGTCAAGGCATAGTTTTTGTGAATGAGGAGAATAAGAATGTCTTTGCAGAATTAGTTGATGTTTTGAAATCTAGTGGAGCAGCTGTGCCACGGGAGCTTGCCAATTCCCGGTATGCCTTGGGAGTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAGCATACACGATGA	1590	0.4409	MADSDTNHNDPSLSTDADAPNDDAEEEIKLRSNDQRLALAGEPKCIICGRYGEYICDETDDDVCSMECKQALLCRIAKSLAPPPETIPAADVCFYVKDVDYVSGTASMTSGLRKKLDIHVKGDVVAPVLSFSACNLPDKLLHNIEAAGYEMPTPVQMQAIPATLTGKSMLVLADTGSGKSASFLIPIISRCVIHRRQYVSDKKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLTKHEIELDDVMTFVVDEVDCMMQRGFRDQVMQIYTALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNRPNKAVKQVAIWVESKQKKQKLFEILASEKHFNPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEVGQGIVFVNEENKNVFAELVDVLKSSGAAVPRELANSRYALGVFSGGKGSKKRKHTR	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g0888	529	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	118	338	IPR027417	-
	Aed7g0888	529	Pfam	DEAD/DEAH box helicase	153	324	IPR011545	GO:0003676\|GO:0005524
	Aed7g0888	529	Pfam	HIT zinc finger	43	69	IPR007529	-
	Aed7g0888	529	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	129	157	IPR014014	GO:0003724
	Aed7g0888	529	MobiDBLite	consensus disorder prediction	1	16	-	-
	Aed7g0888	529	Gene3D	-	102	337	IPR027417	-
	Aed7g0888	529	Pfam	Helicase conserved C-terminal domain	360	471	IPR001650	-
	Aed7g0888	529	SMART	helicmild6	389	471	IPR001650	-
	Aed7g0888	529	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	347	510	IPR001650	-
	Aed7g0888	529	SMART	ultradead3	148	351	IPR014001	-
	Aed7g0888	529	Gene3D	-	338	511	IPR027417	-
	Aed7g0888	529	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	160	336	IPR014001	-
	Aed7g0888	529	MobiDBLite	consensus disorder prediction	1	24	-	-
	Aed7g0888	529	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	276	485	IPR027417	-
	Aed7g0888	529	CDD	SF2_C_DEAD	348	480	-	-
	Aed7g0888	529	PANTHER	ATP-DEPENDENT RNA HELICASE DDX59-RELATED	25	511	-	-
	Aed7g0888	529	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	25	511	-	-
	Aed7g0888	529	Gene3D	-	24	80	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g0888	Aed-Chr7	6718527	6722190	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g0888	130	491	Eukaryotic Initiation Factors Gene Family	AT1G72730	32.425	2.70e-52	181

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g0888	K19466		-	gmx:100781473	936.791