Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0878 ATGAACGATCTAATGACGAAATCCTTCACCAGCTACGTTGATCTGAAGAAGGCCGCGATGAAAGACGTTGATTTGGAAGCTGGCGTCGTCGATGGCGGTGGTGGTTCTACTCGCAACGTTGAATTGAGCTCTTCCACGACGCAGTTGGACACCGACATGGGACTGTTCTTGGAAGAGGCGGAGAAGGTGAAGACCGAAATGGGGTCTCTCCGCGACATCCTCGGGAGGCTGCAGCAGGCGAACGAGGAGAGCAAGTCTCTGCACAAGGTCGAGGCTCTCAAGGCGCTCCGAAGCCGGATCAACGCCGACATCGTTGCTGTGCTGAAGAAGGCCAGGGCGATCCGGGCCCAGCTCGAGGAGATGGACCGCGCCAACGCCGCCAACAGGCGCCTCTCCGGCCTCAAGGACGGCTCCCCCGCCGTCTACCGCACCCGCATCGCCGTCACCAACGGCTTGAGGAAGAAGCTCAAGGAGCTCATGATGGAGTTCCAGGGCCTCCGCCAGAGGATGATGACCGAGTACAAGGATACTGTCGGGAGAAGGTACTTCACGGTGACTGGGGAGTACCCGGATGAGGAAGTGATAGAGAAGATAATTGCCAATGGGAAAGAGGAAGAGGTTATGGGGAAGGCGATACAGGAGCATGGGAGAGGGAAGGTTCTGGAGACAGTGGTGGAGATTCAGGACAGGCATGATGCTGCTAAGGAGGTGGAGAAGAGTTTGCTGGAGCTGCACCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGATATTGAGCATCATGTGTTGCATGCTTCGCATTATGTTAAGGATGGGACCAAGAGTCTTCAGGGTGCAAAGGAGTACCAGAGGAGCAACAGGAAATGGATGTGCATTGGGATCATTCTTCTGCTTATTCTTATTCTGGTTATTGTTATTCCTGTTGCCACAAGTTTAAGCAGATCTTGA 969 0.5418 MNDLMTKSFTSYVDLKKAAMKDVDLEAGVVDGGGGSTRNVELSSSTTQLDTDMGLFLEEAEKVKTEMGSLRDILGRLQQANEESKSLHKVEALKALRSRINADIVAVLKKARAIRAQLEEMDRANAANRRLSGLKDGSPAVYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKDTVGRRYFTVTGEYPDEEVIEKIIANGKEEEVMGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKSLQGAKEYQRSNRKWMCIGIILLLILILVIVIPVATSLSRS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0878 322 CDD SynN 53 207 IPR006011 GO:0016020
Aed7g0878 322 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 315 - -
Aed7g0878 322 SMART tSNARE_6 219 286 IPR000727 -
Aed7g0878 322 SMART SynN_4 48 175 IPR006011 GO:0016020
Aed7g0878 322 PANTHER SYNTAXIN 5 315 IPR045242 -
Aed7g0878 322 SUPERFAMILY t-snare proteins 51 279 IPR010989 GO:0016020|GO:0016192
Aed7g0878 322 ProSitePatterns Syntaxin / epimorphin family signature. 230 270 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aed7g0878 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
Aed7g0878 322 Gene3D - 49 178 - -
Aed7g0878 322 Pfam SNARE domain 261 312 IPR000727 -
Aed7g0878 322 Pfam Syntaxin 56 259 IPR006011 GO:0016020
Aed7g0878 322 Gene3D - 220 319 - -
Aed7g0878 322 Coils Coil 149 169 - -
Aed7g0878 322 CDD SNARE_syntaxin1-like 223 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0878 Aed-Chr7 6627623 6628978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0878 1 299 SNARE and Associated Proteins AT1G08560 62.791 1.05e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0878 K08486 - gmx:100816016 548.51