Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0858 ATGGACATGGATGTTTACCGAAATAATGTATCAGTTTCTTCAAGTGAGTGTCAGCAAGAGCTTCTTCCCACCCTTGATGACCTTTTCTCTCATCAGAACACGGAAGTGGATATTGGCATGGAATGGTTGTCAGTGTTTGTGGAGGACTGTTTCTCTAGTAGGCCAAGTTGCCAACTATTGGCACCCCCTGGCGGTGGTGGTGGTGTTCAAATTCAAACCACAACAAGCACAAGCACTAGCAACAAGCCTTTGCAAAGAGCAGTAGTAGTGCCACCCCAACAAATCCAGTGTCCTAATTTGCAGAATTTTGCTGTGCCAGGGAGAGCCAGGAGCAAAAGGAAGAGACTTTCAGCCCCTAGAACAAGACCATGGTCACAGAAGCACTTCAGCTCACAGATCAATGATGATGGGTTGAGTAGTTGTTCTGACTACCCTCCTCCTCTTTTGAAACAAGCTTATTGGTTGGCTGATAGTGAACTCATTGTGCCTAAGAAGAAAGAAGTAGTGGAAGAGGAGAATGAGGGTGAGGGGGGTGAAGTTAGTAATAATAATGAGGAGCAGCAGAAGGGAATAATAATTCCAAGAAGGTGCACACATTGTATGTCACAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGGCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTTTTTGCATTCCAATTCACACAAGAAAGTCATGGAGATCAGAATGGCTACAGACAACAAGTAG 798 0.4586 MDMDVYRNNVSVSSSECQQELLPTLDDLFSHQNTEVDIGMEWLSVFVEDCFSSRPSCQLLAPPGGGGGVQIQTTTSTSTSNKPLQRAVVVPPQQIQCPNLQNFAVPGRARSKRKRLSAPRTRPWSQKHFSSQINDDGLSSCSDYPPPLLKQAYWLADSELIVPKKKEVVEEENEGEGGEVSNNNEEQQKGIIIPRRCTHCMSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSFLHSNSHKKVMEIRMATDNK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0858 265 Gene3D - 188 264 IPR013088 GO:0006355|GO:0008270
Aed7g0858 265 CDD ZnF_GATA 196 243 IPR000679 GO:0006355|GO:0043565
Aed7g0858 265 ProSiteProfiles GATA-type zinc finger domain profile. 195 227 IPR000679 GO:0006355|GO:0043565
Aed7g0858 265 Coils Coil 259 265 - -
Aed7g0858 265 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 261 - -
Aed7g0858 265 PANTHER GATA TRANSCRIPTION FACTOR 3 261 - -
Aed7g0858 265 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 255 - -
Aed7g0858 265 Pfam GATA zinc finger 197 231 IPR000679 GO:0006355|GO:0043565
Aed7g0858 265 MobiDBLite consensus disorder prediction 107 135 - -
Aed7g0858 265 SMART GATA_3 191 245 IPR000679 GO:0006355|GO:0043565
Aed7g0858 265 ProSitePatterns GATA-type zinc finger domain. 197 222 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0858 Aed-Chr7 6499547 6500934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0858 40 259 C2C2-Gata Transcription Factor Family AT2G45050 40.909 9.31e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed7g0858 GATA 1.4e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0858 - - gmx:100776805 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1033 9 7462320 7463927 Aed7g0858 7 6499547 6500934 PCT