Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed7g0843 | ATGAACGATCTTCTAACGGAATCATTTGATATTCCACGTGGCCAAGGTCATGGAGGTGGTGACCTTGAGTTAGGAGAATATGCAAGGAATTCAGGAGAGCTGGGCTTGGATAGTTTCTTCAAAAAGGAATCACATGAGGAATCCAAAGCTGTGACCAAGGCTCCTTCCATGAAGGCTATAAAGCAGAAAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCACATTTCTTAAAGACCAAAGTTGAAGAACTGGACAAAGAGAACTTGGCAAACAGGCAGAAGCCTGGGTGTGGAAAAGGATCAAGTGTTGACCGGTCAAGAACAGTAACAACCATTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGACCCTGAGAGAGGCCATCCATCAAGAGTATCGTGAGGTTGTTGAGAGACGTGTTTTCACAGTTACAGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCAATCCAGGAACAAGGGCGAGGCCAGATAATGGACACCTTGGCCGAAATTCAAGAGCGGCATGAAGCAGTTAGAGATGTTGAGAGAAAGCTTCTTGATTTACAACAGATATTTCTGGATATTGCGGTTTTAGTGGATGCTCAAGGAGACATGCTTGACAACATAGAAACACAGGTTTCAAGTGCAGTGGATCATGTGCAGCAAGGCAACAATGCCCTCCAGAAGGCAAAGAATTTACAAAGGCACTCTAGAAAATGGATGTGCGTTGCAATCATGATACTTCTCATCGTTATGATGGTCATTGTTGTTGCTGTTCTCAAACCTTGGACTACCAATAGGGGTGCATAG | 867 | 0.4233 | MNDLLTESFDIPRGQGHGGGDLELGEYARNSGELGLDSFFKKESHEESKAVTKAPSMKAIKQKMEKDVDEVKKTAHFLKTKVEELDKENLANRQKPGCGKGSSVDRSRTVTTISLKKKLKDKMAEFQTLREAIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVERKLLDLQQIFLDIAVLVDAQGDMLDNIETQVSSAVDHVQQGNNALQKAKNLQRHSRKWMCVAIMILLIVMMVIVVAVLKPWTTNRGA | 288 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed7g0843 | 288 | SMART | SynN_4 | 31 | 138 | IPR006011 | GO:0016020 | |
| Aed7g0843 | 288 | CDD | SNARE_syntaxin1-like | 186 | 248 | - | - | |
| Aed7g0843 | 288 | Gene3D | - | 177 | 280 | - | - | |
| Aed7g0843 | 288 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 187 | 249 | IPR000727 | - | |
| Aed7g0843 | 288 | SUPERFAMILY | t-snare proteins | 51 | 242 | IPR010989 | GO:0016020|GO:0016192 | |
| Aed7g0843 | 288 | Gene3D | - | 40 | 145 | - | - | |
| Aed7g0843 | 288 | Pfam | SNARE domain | 223 | 275 | IPR000727 | - | |
| Aed7g0843 | 288 | PANTHER | - | 3 | 279 | - | - | |
| Aed7g0843 | 288 | SMART | tSNARE_6 | 182 | 249 | IPR000727 | - | |
| Aed7g0843 | 288 | Coils | Coil | 116 | 136 | - | - | |
| Aed7g0843 | 288 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Aed7g0843 | 288 | PANTHER | SYNTAXIN | 3 | 279 | IPR045242 | - | |
| Aed7g0843 | 288 | ProSitePatterns | Syntaxin / epimorphin family signature. | 193 | 232 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Aed7g0843 | 288 | Coils | Coil | 61 | 88 | - | - | |
| Aed7g0843 | 288 | Pfam | Syntaxin | 44 | 222 | IPR006011 | GO:0016020 | |
| Aed7g0843 | 288 | CDD | SynN | 42 | 174 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed7g0843 | Aed-Chr7 | 6403526 | 6410400 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed7g0843 | 1 | 288 | SNARE and Associated Proteins | AT3G03800 | 66.775 | 1.74e-140 | 396 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed7g0843 | K08486 | - | gmx:100306329 | 496.508 |