Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0820 ATGGATGCAAAAGCTGATGAGAAACTTTGCCATCTGATTGAATTTGAAATGAATTCAAACAGGAGCATACGCACTAACACCCGGGCAAGGTCGTCATCCTTAGCCTCTTCTGCATGTGGTTTATCCTCAGATCCTCTTTCTTTCCCAGGTTTTGGTTTGCAGCATAACCAACAAAAATGGGATGATGCCTCAAATTCAGATTATGGGATCAGGGTAGAAGCACCTTTCAAGGAATTCAATCAGCCCTCTCAAACCCAGTCTCTGCTTCCTTGCAACTCAAACAATGGGATTGAAATCCCTGATCAAAGTGAATCATCACAAACCAATACAATCCAAGATTGGAATCCTAGTGTGATGTTGAATAACCTCTCTTTCATGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGCTCAACAAAAAAGCGTTGGACAACCCAATGAACTTGTAATTCAGGAACAGCAGCTCGTCACAACTGATCTCACATCAATCATTATTCAATTGATCTCTACCGCAGGTAGTCTTCTCCCTTCTGCAAGGCATAACCTTGTAAACACTAGTTCATTGGTTGGACAGATTGATCAGCTTCGTGGAACGACCGTTCCTCCTGGGACTGGTGTGAGTAGCAGTTGTATTCAACCACAGAATACTGGTGGAAAAAAGTTGTCTGATCAGTCCATGCAGATTGATCTACCTAATACCGGTGAAATGGAGCAAAACTACAACATGGTAGAACATGAACTGAAAGATGAAGAAGAAGCAGAGGATGGAGAAAACCTTGCCCCTGGTTCGTATGAGATTCTACAATTAGAAAAAGAAGAAATCCTTGCACCTCATACCCATTTCTGTACAATTTGCGGGAAGGGGTTCAAGAGAGACGCTAATCTTCGAATGCACATGCGGGGCCATGGTGACGAGTACAAAACCGCAGCAGCGCTTGCAAAACCGCACAAAGAATCTGCGTCGCCAAAGCTTATCAAGAGGTATTCCTGCCCCTACACTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTCCAGCCTCTCAAGACGATCTTATGCGTCAAAAACCATTACAAAAGGACTCATTGTGACAAGAGTTACATTTGCAGCAGATGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTGAAAACTCATGAAAAGCACTGTGGTAGGGACAAATGGCTCTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTTCAAGGACATACACCAGCCATTCCCTTGGATGACACTAAAGGGGTAGTAGCTGAGCCACCCCCCATTCATGAAAGCAAAGAAAACAACAGTAAGGTACAGTGTATGAACTTCACTTTTGAATCAAATCCTTCAAATGAAAATGAAGTTCAAAATGTCGTTGATGCAAAAGGTGATAGCGATGATTATTTCTCATCATTGAACTTTGAAGCCAACTTTGGTGGGTTCAATGAGTTCACCAGACCTCTATTCGATGACTCAGAAGGTTCATTCTCTTTTGCCATGCCTGAATCTTTCAAATCTGGAGGAGACTCAAGTTCTGACAATCTTTTGTAA 1590 0.4264 MDAKADEKLCHLIEFEMNSNRSIRTNTRARSSSLASSACGLSSDPLSFPGFGLQHNQQKWDDASNSDYGIRVEAPFKEFNQPSQTQSLLPCNSNNGIEIPDQSESSQTNTIQDWNPSVMLNNLSFMEEKIHQLQDLVHLIAQQKSVGQPNELVIQEQQLVTTDLTSIIIQLISTAGSLLPSARHNLVNTSSLVGQIDQLRGTTVPPGTGVSSSCIQPQNTGGKKLSDQSMQIDLPNTGEMEQNYNMVEHELKDEEEAEDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESASPKLIKRYSCPYTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVVAEPPPIHESKENNSKVQCMNFTFESNPSNENEVQNVVDAKGDSDDYFSSLNFEANFGGFNEFTRPLFDDSEGSFSFAMPESFKSGGDSSSDNLL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0820 529 Gene3D Classic Zinc Finger 268 336 - -
Aed7g0820 529 SUPERFAMILY beta-beta-alpha zinc fingers 282 310 IPR036236 -
Aed7g0820 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 311 IPR013087 -
Aed7g0820 529 SMART c2h2final6 284 306 IPR013087 -
Aed7g0820 529 SMART c2h2final6 370 392 IPR013087 -
Aed7g0820 529 SMART c2h2final6 332 365 IPR013087 -
Aed7g0820 529 ProSitePatterns Zinc finger C2H2 type domain signature. 286 306 IPR013087 -
Aed7g0820 529 Coils Coil 237 257 - -
Aed7g0820 529 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 55 516 - -
Aed7g0820 529 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 55 516 IPR044300 GO:0010044|GO:0010447
Aed7g0820 529 MobiDBLite consensus disorder prediction 203 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0820 Aed-Chr7 6270824 6273916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0820 251 529 C2H2 Transcription Factor Family AT1G34370 67.128 3.20e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed7g0820 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0820 - - gmx:100500526 887.871