Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0790 ATGGCAGCAATTCGAGCAAGAGCATTAAATGATGGACAATTTGAGAATGCATCTTTATATGTTGGTGATCTCGATAGATACGTGAATGAGACACAACTGTTTGAACTATTCAGTCAAGTGGCTCAAGTGATTTCAGTTAGGGTTTGCAGGGACCAAATCAAAGGATGCTCTCTTGGATATGCTTATGTCAACCTTTCCGACGTTCATGAAGCTGTTAATGCCATAGAACAGCTAAATTTTACTCCTCTGAATGGAAGATCCATTCGTATTATGTTTTCTAACCGAGATCCTAGCATTCGGAGAAGCGGACATGCAAATGTTTTTGTGAAGAACCTGGACGCATCAATTGATAACAAGACATTGCATGAAACTTTTGCTGCCTTTGGATCTGTGCTCTCGTGCAAGGTAGCAGTTGATGACCATGGCCATTCGAAAGGGTATGGATTTGTGCAGTTTGACAACGATGAGTCTGCCCAAAATGCTATCAACAAGTTGAATGGCATGTTGATAAATGATAAAAAGATCTATGTTGGACTCTTTATTAGGCGTCAGGAAAGGGGTCAAGCAGACTATGGATCATCATCAAGATTCACCAATGTGTATGTGAAAAACTTTTCTGAAACATTTACCGATGAAGACCTTAGGCAGCTCTTCAGCACCTATGGTACAATAACTAGTGCTGTTGTAATGAAAGACACAGATGGGAAGTCTAGATGCTTTGGTTTTGTGAATTTCGAAAGTCCAGATTCAGCTGCTACTGCTGTTTCAAGCTTAAATGGAACCACAGTCGATGGTGAAATGGTTTTATATGTAGGAAGGGCTCAGAAAAAAGCAGAAAGAGTGGCTGAGTTGACAGCCATGTTTGAAAATGAAAGAATACGTAGGTACGAGAAACGTGCTAATTTGTACGTTAAAAACCTTGATGACAATGTCAACGATGAGAAACTGATTGAGCTATTTTCTGAGTTTGGAACAATAACATCTTGCAAGTTGATGGTTGGATCAAATGGGCAAAGCAAGGGCTATGGTTTTGTTGCCTTTTCTACTCCTGAGGATGCAAGTAGAGCGTTGAATGAAATGAACGGAAAGATGATTGGACGCAAACCTTTGTATGTAGCTGTGGCCCAGCGTAGAGAAGAGAGGAAGGCTTTGTTGCAGAGTCAGTTTTCTCAGATGGTGAGAGGTCTAATTAGACATTTGCCAGCAGGAATGTCTGGATATCATATGGGAACACCCATATTTGCCCCTCAACAGCTGTATTTTGGTCAAGGTGTATCACCTCAGCCAACAGGATATGGATATGGCTTCCAACAGCAGCAACCCTTCCAAGGCATGTATCCTAATGTTGCTCCGAATTACCTTATGCCATACCATATGGAGCCATACCAATACCATATGGAGCAACAAGGTTTTCCATACCAACACCTGCTTCCGAACAATATGCGTCATAACTCTAATCAGTTTAGATACATGGGAAATGGTCGAAATGGCATGGATTATGGTTCAGGAATCTCTACAGCTCCCGTTGATAATCAGCGTCCTAACACACTTGCCTCAGCTTTGTCATCTGCTACCCCAGAAAACCAGCGTCGGATGTTGGGTGACCATCTATATCCACTGGTGGAAGCACTTACGCCAAGTGATCAGACTGCAAAGGTGACCGGAATGTTGCTGGAAATGGATCAGGCAGAGGTAATCCATTTGATTGAGTCTCCTGAGGAAATGAAAACAAAGGTGTCTGAGGCAATGAAACTTCTTAGTGAAGCGGCATCAGGTTCTAAAGTTGGTGATCAACCTGCTGAAGGCTCATTGTCATTGAATGAATGA 1827 0.4215 MAAIRARALNDGQFENASLYVGDLDRYVNETQLFELFSQVAQVISVRVCRDQIKGCSLGYAYVNLSDVHEAVNAIEQLNFTPLNGRSIRIMFSNRDPSIRRSGHANVFVKNLDASIDNKTLHETFAAFGSVLSCKVAVDDHGHSKGYGFVQFDNDESAQNAINKLNGMLINDKKIYVGLFIRRQERGQADYGSSSRFTNVYVKNFSETFTDEDLRQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAATAVSSLNGTTVDGEMVLYVGRAQKKAERVAELTAMFENERIRRYEKRANLYVKNLDDNVNDEKLIELFSEFGTITSCKLMVGSNGQSKGYGFVAFSTPEDASRALNEMNGKMIGRKPLYVAVAQRREERKALLQSQFSQMVRGLIRHLPAGMSGYHMGTPIFAPQQLYFGQGVSPQPTGYGYGFQQQQPFQGMYPNVAPNYLMPYHMEPYQYHMEQQGFPYQHLLPNNMRHNSNQFRYMGNGRNGMDYGSGISTAPVDNQRPNTLASALSSATPENQRRMLGDHLYPLVEALTPSDQTAKVTGMLLEMDQAEVIHLIESPEEMKTKVSEAMKLLSEAASGSKVGDQPAEGSLSLNE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0790 608 Gene3D - 106 179 IPR012677 -
Aed7g0790 608 SUPERFAMILY RNA-binding domain, RBD 197 283 IPR035979 GO:0003676
Aed7g0790 608 CDD RRM1_I_PABPs 18 97 - -
Aed7g0790 608 SMART rrm2_1 106 178 IPR003954 GO:0003676
Aed7g0790 608 SMART rrm2_1 199 271 IPR003954 GO:0003676
Aed7g0790 608 SMART rrm2_1 301 373 IPR003954 GO:0003676
Aed7g0790 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Aed7g0790 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 266 IPR000504 GO:0003723
Aed7g0790 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 370 IPR000504 GO:0003723
Aed7g0790 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 89 IPR000504 GO:0003723
Aed7g0790 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Aed7g0790 608 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 513 591 IPR002004 GO:0003723
Aed7g0790 608 PANTHER RNA BINDING PROTEIN 513 594 - -
Aed7g0790 608 CDD RRM3_I_PABPs 197 277 - -
Aed7g0790 608 PANTHER POLYADENYLATE-BINDING PROTEIN 10 507 - -
Aed7g0790 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Aed7g0790 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 377 IPR000504 GO:0003723
Aed7g0790 608 CDD RRM4_I_PABPs 300 377 - -
Aed7g0790 608 SMART rrm1_1 106 178 IPR000504 GO:0003723
Aed7g0790 608 SMART rrm1_1 18 91 IPR000504 GO:0003723
Aed7g0790 608 SMART rrm1_1 199 272 IPR000504 GO:0003723
Aed7g0790 608 SMART rrm1_1 301 373 IPR000504 GO:0003723
Aed7g0790 608 PANTHER RNA BINDING PROTEIN 10 507 - -
Aed7g0790 608 PANTHER POLYADENYLATE-BINDING PROTEIN 513 594 - -
Aed7g0790 608 Gene3D - 7 105 IPR012677 -
Aed7g0790 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Aed7g0790 608 SUPERFAMILY PABC (PABP) domain 460 590 IPR036053 GO:0003723
Aed7g0790 608 SMART poly_2 525 589 IPR002004 GO:0003723
Aed7g0790 608 SUPERFAMILY RNA-binding domain, RBD 16 185 IPR035979 GO:0003676
Aed7g0790 608 CDD RRM2_I_PABPs 103 178 IPR045305 -
Aed7g0790 608 Gene3D - 510 591 - -
Aed7g0790 608 Gene3D - 181 292 IPR012677 -
Aed7g0790 608 MobiDBLite consensus disorder prediction 588 608 - -
Aed7g0790 608 SUPERFAMILY RNA-binding domain, RBD 299 398 IPR035979 GO:0003676
Aed7g0790 608 Gene3D - 293 388 IPR012677 -
Aed7g0790 608 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 17 586 IPR006515 GO:0003723
Aed7g0790 608 Pfam Poly-adenylate binding protein, unique domain 521 586 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0790 Aed-Chr7 5974129 5977407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0790 16 598 Eukaryotic Initiation Factors Gene Family AT1G71770 53.365 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0790 K13126 - gmx:100783163 780.4