Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0788 ATGAGAAGAAGAGTCAGAGAGCTTCTTAGCCTCTCTTTTACTCTAAAGCACAAGCCTTTAGCAAAATCAGTACCACCCACTTCTTTATTTCAAAGTAGCATCACATTCTCAACCTCTGTAACCCCTCCTATAGAAGAACCTAAGACTTCACCATCCAAGTCCCAAAGGGACTCACTGATTTTCGAACAGTTCAAGCAAAGGAAACTCAAAGGGTCACCAAAACACTCAAAGGGTAGTACCCCACAAGCGCGTTCAACTTCAATGCCATTAAGTTCAGATCTTGATACTGATACGGAGGTGGTTCAAAAGGGTGTTCAGAATGAGAATGACCCCACCCTGGTTGTTGCAAGTTTCAAGGAGTTGGGTGTGTGTGAAGAGCTTGTTGAGGTCATTGAGGGGATTGGTGAGTTTGCTCCAAGTGAGATACAGTGTGTGGCTATTCCTGCTGTTTTGGAAGGGAAGAGTGTGTTGTTGAGTTCACCATCTGAACCTGACAGGACCTTGGCATTCTTGTTGCCCCTTGTTCAGCTGCTACGACGGGACAGAGAGTTGCCTGGTTTGAATTCAAAGCATCCACGAGCTATCGTGCTTTGTGCTACAGAGGAGAAAGCTGCACAGTGCTTTAATGCTGCAAAATATATCATCCATAATGCAGAATTGAAGTCTACAAAGGATGTTCGTTCATCAGATAACGAGCCTTCACATGCCTCAATTGGCCTCATGATTGGAACTCCTAGTGAGATTCTTCAATTCATTGAAGAGGGAAGTGTTGTCCCTGCTGAAATAAGATACTTGGTGTTGGATGAGGCAGATTGTATGCTTGGTAGTGGCCTTGGTCCCGAAATCCATAAAATTCTCAGGCCATTACAAGATCATGAATCAAAATCTTCTGTCAAAAGATTGCAAACTGTTTTGGCGATTTCAACAATAGCTGAGGTTTTGGGTGAACAATCACCCGTTGTAAAGCATCTTGAGTGTGATCATGCAGGAAATATTTCTGCAATGTCTCTAGAAATGGAACAAACAGAAGTGTTTCATTTCACTGAGTCTCTTCACTCTCTTAGGAAAAAAGTGGCAGAGGCCATGGATTCCCTTTTGAAACAACAGTAA 1110 0.4306 MRRRVRELLSLSFTLKHKPLAKSVPPTSLFQSSITFSTSVTPPIEEPKTSPSKSQRDSLIFEQFKQRKLKGSPKHSKGSTPQARSTSMPLSSDLDTDTEVVQKGVQNENDPTLVVASFKELGVCEELVEVIEGIGEFAPSEIQCVAIPAVLEGKSVLLSSPSEPDRTLAFLLPLVQLLRRDRELPGLNSKHPRAIVLCATEEKAAQCFNAAKYIIHNAELKSTKDVRSSDNEPSHASIGLMIGTPSEILQFIEEGSVVPAEIRYLVLDEADCMLGSGLGPEIHKILRPLQDHESKSSVKRLQTVLAISTIAEVLGEQSPVVKHLECDHAGNISAMSLEMEQTEVFHFTESLHSLRKKVAEAMDSLLKQQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0788 369 SUPERFAMILY PABC (PABP) domain 312 365 IPR036053 GO:0003723
Aed7g0788 369 Gene3D - 316 368 - -
Aed7g0788 369 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 369 - -
Aed7g0788 369 MobiDBLite consensus disorder prediction 75 96 - -
Aed7g0788 369 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 1 369 - -
Aed7g0788 369 Gene3D - 82 315 IPR027417 -
Aed7g0788 369 SMART poly_2 306 368 IPR002004 GO:0003723
Aed7g0788 369 MobiDBLite consensus disorder prediction 35 59 - -
Aed7g0788 369 Pfam Poly-adenylate binding protein, unique domain 319 363 IPR002004 GO:0003723
Aed7g0788 369 MobiDBLite consensus disorder prediction 35 96 - -
Aed7g0788 369 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 328 IPR014001 -
Aed7g0788 369 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 254 369 IPR002004 GO:0003723
Aed7g0788 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 305 IPR027417 -
Aed7g0788 369 SMART ultradead3 135 318 IPR014001 -
Aed7g0788 369 Pfam DEAD/DEAH box helicase 141 306 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0788 Aed-Chr7 5961094 5963493 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0788 115 289 Eukaryotic Initiation Factors Gene Family AT3G19760 25.275 2.17e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0788 - - gmx:100800575 589.341