Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0760 ATGGTACGATTCCAATGGCTCTACATTGATTTTGCTAAACAAGCATTCTTCAGAGGATGCGCTCTGGTGGCGAACGAGGAATTCCAGCACATTCTGCGTGTGCTGAACACCAACGTAGATGGGAAGCAGAAGATAATGTTCGCTCTCACCTCTATCAAAGGTATTGGCAGGCGATTCGCTAACATTTGCTGCAAAAAATCCGATGTCGACATGAACAAGAGAGCTGGTGAATTGACTGCTGCTGAGTTGGATAATCTTATGACTGTGGTTGCCAACCCTCGGCAATTCAAGATCCCGGATTGGTTTTTGAATAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTGGTGTCGAATGCACTGGATATGAAGTTGAGGGATGATTTGGAGCGGTTGAAGAAAATCAGAAATCACCGAGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGCCAGCATACCAAGACTACTGGTCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAGCGTTGA 516 0.4651 MVRFQWLYIDFAKQAFFRGCALVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKSDVDMNKRAGELTAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0760 171 Pfam Ribosomal protein S13/S18 33 161 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed7g0760 171 ProSitePatterns Ribosomal protein S13 signature. 140 153 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed7g0760 171 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 22 171 - -
Aed7g0760 171 SUPERFAMILY S13-like H2TH domain 32 171 IPR010979 GO:0003676
Aed7g0760 171 Gene3D 30s ribosomal protein s13, domain 2 111 161 IPR027437 -
Aed7g0760 171 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 22 171 - -
Aed7g0760 171 ProSiteProfiles Ribosomal protein S13 family profile. 34 164 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed7g0760 171 Hamap 30S ribosomal protein S13 [rpsM]. 31 171 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed7g0760 171 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 18 171 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed7g0760 171 Gene3D - 20 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0760 Aed-Chr7 5778547 5780696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0760 21 171 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 94.702 1.42e-106 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0760 K02964 - egr:104445169 293.123