Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0718 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGATGTAAGGCTTCCTGGTGGGAGCAAATCAAATAGTTCCGTCCATGAGGCACACGAAGGCCCGGCAGTTGTACAGAACAGCCGGTGGGCTAGCCTTCCACCTGAGCTTCTTCGTGATGTTGTTAAAAGATTGGAAGAAAGTGAGAGTACATGGCCTGCTCGTAAGCATGTGGTTTCTTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACAGGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTGGTAAGCTCAGATTTGGTAGCATATGCCATATGACCTTCATTTCTTTTCGGAAAAATGGAGGGCTCAATGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACGACATGCACAGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGTCTCCTCCAGGCCGAAGCCGTAGGTTTTATTCAAAAAAGGTGTCTCCAAAGGTCCCTAGTGGCAGCTACAACATTTCCCAGATCACCTATGAGTTGAATGTCCTCGGCACTAGGGGTCCGCGCAGAATGAACTGCACCATGCACTCAATCCCTATGTCATCCCTTGAGCCTGGTGGCTCTGTCCCAGGCCAGCCAGAGCTCCTTCCCCGCTCACTTGAAGATTCCTTCCGGAGCATATCCTTCGCTAGATCAATCGACAACTCAACCGAGTTTAGCAGCTCCAGGTTCTCGGACATATTTGTGGGGGGCAACAACGAAGAGGAGCAGGGAAAGGACAGGCCTTTAGTTCTCAAGAACAAAGCGCCAAGGTGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAAAGGAAGGGTGACTGTCGCCTCTGTCAAGAATTTCCAGCTGATTGCTGCGACGCAGCCACCTGCAGCCAGTGCTCCTATGCCATCATCATCTCAGCCAGCGCAATCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATATTTACTATGGACTATAGATATCCCCTATCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGTTTTGACACAAAACTGGCTTGTGAATAG 1350 0.4659 MSFRSIVRDVRDGFGSLSRRSFDVRLPGGSKSNSSVHEAHEGPAVVQNSRWASLPPELLRDVVKRLEESESTWPARKHVVSCAAVCKSWREMCKEIVTGPEFCGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLSPGKLRFGSICHMTFISFRKNGGLNALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNISQITYELNVLGTRGPRRMNCTMHSIPMSSLEPGGSVPGQPELLPRSLEDSFRSISFARSIDNSTEFSSSRFSDIFVGGNNEEEQGKDRPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLIAATQPPAASAPMPSSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0718 449 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 449 - -
Aed7g0718 449 Gene3D Tubby Protein; Chain A 110 443 IPR025659 -
Aed7g0718 449 Gene3D - 46 97 - -
Aed7g0718 449 Pfam F-box domain 51 97 IPR001810 GO:0005515
Aed7g0718 449 ProSitePatterns Tub family signature 1. 368 381 IPR018066 -
Aed7g0718 449 PANTHER TUBBY-RELATED 1 449 - -
Aed7g0718 449 SUPERFAMILY Tubby C-terminal domain-like 100 449 IPR025659 -
Aed7g0718 449 SUPERFAMILY F-box domain 41 94 IPR036047 GO:0005515
Aed7g0718 449 ProSitePatterns Ribosomal protein L34e signature. 16 29 IPR018065 -
Aed7g0718 449 ProSitePatterns Tub family signature 2. 434 449 IPR018066 -
Aed7g0718 449 PRINTS Tubby superfamily signature 206 230 IPR000007 -
Aed7g0718 449 PRINTS Tubby superfamily signature 406 425 IPR000007 -
Aed7g0718 449 PRINTS Tubby superfamily signature 427 449 IPR000007 -
Aed7g0718 449 PRINTS Tubby superfamily signature 190 206 IPR000007 -
Aed7g0718 449 PRINTS Tubby superfamily signature 255 282 IPR000007 -
Aed7g0718 449 PRINTS Tubby superfamily signature 368 384 IPR000007 -
Aed7g0718 449 PRINTS Tubby superfamily signature 350 367 IPR000007 -
Aed7g0718 449 Pfam Tub family 112 444 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0718 Aed-Chr7 5380815 5385443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0718 1 449 TUB Transcription Factor Family AT1G76900 65.839 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed7g0718 Tub 8.8e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0718 K19600 - gmx:100799499 761.525