LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g0657	ATGGCTTCCGATCTCGAAGCAAAAGCCAAAGAGGCCTTCGTCGAAGACCACTTCGAACTCGCCGTGGACCTTCTCTCTCAGGCTATTAATCTCGAACCCAACAAAGCCGAACTCTACGCCGACCGCGCCCAAGCCAACATCAAACTCAATAGCTTCACTGAGGCTGTTGCTGATGCTAGCAAAGCCATTGAATTGAATCCTTCTCTACCAAAAGCATATTTGCGGAAAGGTGCTGCATGCATGAAGCTTGAGGAATATGAGACTGCAAAGGCTGCCCTGGAGGTGGGTGCATCATTGTCTCCAGACAACTCAAGGTTTGATACTTTGATCAAAGAATGTGATAAGCTCATTGCAGAAGAATCTTATACCATACCTATACAGGAAAAGACCACAACACAGGATGTTACTCCAAAAGATGTTCAGCAGCAGGATGATCTTCTAGAGCAGCCAACAGTTGCAGTGACTAAACCTAAATATAGGCATGAATTCTACCAGAAACCTGATGAGGTGGTTGTAACTATATTTGCAAAGAAAATCCCAAAGGAAAGCATTACTGTCGACTTCGGTGAACAAATACTAAGTGTTAGTATTAATGTACCTGGAGAAGATGCATATGTTTTTCAACCTCGCTTATTTGGAAAGATTGTACCTTCCAATTGCCGATATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGTGAAAGCAGAACCTATTCAGTGGACATCTCTAGAATTCACCAGTGGCATTGTTGTACCACAGAGGGTTAATGCTTCTTTAGCTACTGGAAGTCAAAGACCTTCTTACCCGTCCTCAAAACCAACAAGAGACTGGGACAAGATTGAAGCTCAAGTCAAGAAAGAGGTGGAGTCTAATGGGACAGTGCTGTCTACAAACTGGAAAGAAGTGGGATTAAAGAAAGTCGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAA	972	0.4321	MASDLEAKAKEAFVEDHFELAVDLLSQAINLEPNKAELYADRAQANIKLNSFTEAVADASKAIELNPSLPKAYLRKGAACMKLEEYETAKAALEVGASLSPDNSRFDTLIKECDKLIAEESYTIPIQEKTTTQDVTPKDVQQQDDLLEQPTVAVTKPKYRHEFYQKPDEVVVTIFAKKIPKESITVDFGEQILSVSINVPGEDAYVFQPRLFGKIVPSNCRYEVLSTKIEIRLVKAEPIQWTSLEFTSGIVVPQRVNASLATGSQRPSYPSSKPTRDWDKIEAQVKKEVESNGTVLSTNWKEVGLKKVEGSPPDGMELKKWEY	323

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g0657	323	Pfam	SGS domain	282	321	IPR007699	-
	Aed7g0657	323	SUPERFAMILY	TPR-like	3	113	IPR011990	GO:0005515
	Aed7g0657	323	ProSiteProfiles	CS domain profile.	156	245	IPR007052	-
	Aed7g0657	323	PANTHER	PHOSPHATASE-RELATED	1	288	-	-
	Aed7g0657	323	Pfam	Tetratricopeptide repeat	36	68	IPR019734	GO:0005515
	Aed7g0657	323	Pfam	Tetratricopeptide repeat	71	103	IPR019734	GO:0005515
	Aed7g0657	323	ProSiteProfiles	TPR repeat profile.	70	103	IPR019734	GO:0005515
	Aed7g0657	323	SMART	tpr_5	36	69	IPR019734	GO:0005515
	Aed7g0657	323	SMART	tpr_5	2	35	IPR019734	GO:0005515
	Aed7g0657	323	SMART	tpr_5	70	103	IPR019734	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g0657	Aed-Chr7	4853210	4857479	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g0657	1	115	U-box Gene Family	AT3G07370	26.891	1.21e-06	47.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g0657	K12795		-	gmx:100780174	574.318

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