Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0625 ATGCAGGATCCCAATGATGATAAGGGTGAAAGTAGACTCTACATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTTAAAATGTTTTCTCCCTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACGCGCGGCCCAAAACGTGGGGAGCCACGTGGTTTTGCTTTTATCCAATACAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTAGCTTGCGGCCGGCCTTTGGTTGTTCGTCGTGCTGGTGAGAAGTGCATGTTGGAAACAGCTAATAACTCTACAAAAGCAGCAAGTGAAGGGCACAAGATGCATCTCACTAGTGGTAGTGGCAGCGGTGGTGGTGCCATGGGACAAACAAGTCGCAGTGCAAAAATCGCTGCTATAAAAAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTTGTTCTAGGACCAAGAAGCAGAAGCAAAGTGACAATATTTCTTGA 492 0.4431 MQDPNDDKGESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRLACGRPLVVRRAGEKCMLETANNSTKAASEGHKMHLTSGSGSGGGAMGQTSRSAKIAAIKNKLKSLEEESSCSRTKKQKQSDNIS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0625 163 PANTHER RNA-BINDING PROTEIN 18-RELATED 5 160 - -
Aed7g0625 163 CDD RRM_RBM18 12 90 IPR039157 -
Aed7g0625 163 SMART rrm1_1 12 88 IPR000504 GO:0003723
Aed7g0625 163 Coils Coil 134 154 - -
Aed7g0625 163 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 160 - -
Aed7g0625 163 MobiDBLite consensus disorder prediction 144 163 - -
Aed7g0625 163 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Aed7g0625 163 MobiDBLite consensus disorder prediction 100 134 - -
Aed7g0625 163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 85 IPR000504 GO:0003723
Aed7g0625 163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 92 IPR000504 GO:0003723
Aed7g0625 163 Gene3D - 1 136 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0625 Aed-Chr7 4652875 4653547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0625 11 93 Eukaryotic Initiation Factors Gene Family AT3G16380 37.349 3.41e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0625 K24527 - gmx:100806572 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0625 7 4652875 4653547 Aed7g0625 7 4652875 4653547 ECH