Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0567 ATGGGTGTGAAAAATCTGTGGGATGTCCTCGAATCGTGCAAGAAAACGGTTCCCCTTCACCATTTACAGAACAAGAGGGTGTGCGTGGACCTCTCGTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCGCACGCTTGCGTTAAGGAGAAAGTGTACCTCAGAGGACTCTTTCACCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCGTCTTCGTCGCAGATGGATCAATTCCCGCCATCAAATTATCAACCTATAGGCGTCGCTTAAATGTTGGAAAGGAGGTTCATAGCGTCCATGTTTTTTCAATGATAATAATGCAGGTACAGGTAACACAAAATGAAACTAACTTGCAGAAAGTGACTTCATTACGGAGAAACATGGGGTCTGAGTTTTCTTGCATGATCAAAGAGGCTAAAGTCTTGGGGATGGCTCTTGGCATTTCTTCTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAATTTTGAATCATTATGTGATGGATGTTTCAGTTCAGATTCAGACATATTCCTTTTTGGGGCAAGGACAGTATATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGGCAGATATTGAAAGAAAACTTGGATTTGGAAGGGACTCGTTGATTGCTCTCTCCTTGCTTCTTGGCAGTGACTATTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATAGTCAAATCAATTGGAGACAAATATATTCTTAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGGTGAGAATGATTTACGGCCGGATGATACCATTTTACAAGTAATTAATGCTTTTATGAAGCCAAAATGTCACCCAGCAGATTCAGATATTGTGCACAAGGCTCTTGCTCAATATTCGTTTCAACGTACTAAACTCCAGCAGATATGTGCTGGATTCTTTGAATGGCCTTCAGAGAAAACAGATGGGTATGTCCTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAATCTTCCTTTACATGAGATCCCTGTGAAGTGTCCTGTGTCAGAAATCATCAAGAGCCGAAGGGTTCAAGGGAGAGAGTGCTATGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAATTTCAATAGTACCTGCTGATCTTTTAGAAAGTGCCTGTCGTGAGAAGATTTCGGAGTTCAAGGAAAGAAAAGCTCAAAAGAAGAAACAAAATATTCAGAAAAGAAAACCAAAGAAAAAGGAAACTAATTCATCTGTGGCGGAGCTTGATCTAAAACTTCAGAATTTGATGCTTGATATTAATTTGAGAGATGAGGCCAACTTCAATGCCTCTGATTCTTCAGGATCAAGGATTACAACTGCTATGGCTGAAGCTGATCTGAATACCACAGACGTATTGCCCCTATCACATGACATAGAACAACACACTGAGTTAATCCAGAATACTAGCTACATATATAGCAGTGAGGCAGTTTCCAATAGAGATAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAGAAATCCAACTTTTTCTCAAAATGTCAGCAACCAAGTGACCAACATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCTGTTGAACACAAGCAGAAAGCGAAGGAACTGAGATTGTTCTTAGCTAGTATTAGGAATGAAGTTCAGTGA 1761 0.4083 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLFHRLRALIALNCSLVFVADGSIPAIKLSTYRRRLNVGKEVHSVHVFSMIIMQVQVTQNETNLQKVTSLRRNMGSEFSCMIKEAKVLGMALGISSLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKYILKKFASEGLGWVKKRKGGENDLRPDDTILQVINAFMKPKCHPADSDIVHKALAQYSFQRTKLQQICAGFFEWPSEKTDGYVLPSIAERDLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLEISIVPADLLESACREKISEFKERKAQKKKQNIQKRKPKKKETNSSVAELDLKLQNLMLDINLRDEANFNASDSSGSRITTAMAEADLNTTDVLPLSHDIEQHTELIQNTSYIYSSEAVSNRDKNEIIDLLSPSPPKKSNFFSKCQQPSDQHIEVINLSDSENDMSVEHKQKAKELRLFLASIRNEVQ 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0567 586 CDD CD_CSD 373 421 - -
Aed7g0567 586 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 480 - -
Aed7g0567 586 Gene3D - 2 214 - -
Aed7g0567 586 SMART xpgineu 145 215 IPR006086 GO:0004518
Aed7g0567 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aed7g0567 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 144 161 IPR006084 -
Aed7g0567 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 220 235 IPR006084 -
Aed7g0567 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Aed7g0567 586 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 165 185 IPR006084 -
Aed7g0567 586 SUPERFAMILY Chromo domain-like 372 427 IPR016197 -
Aed7g0567 586 SUPERFAMILY PIN domain-like 3 230 IPR029060 -
Aed7g0567 586 SMART xpgn3 1 97 IPR006085 GO:0004518
Aed7g0567 586 Gene3D - 216 275 - -
Aed7g0567 586 Pfam XPG I-region 149 230 IPR006086 GO:0004518
Aed7g0567 586 Gene3D - 370 438 - -
Aed7g0567 586 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Aed7g0567 586 MobiDBLite consensus disorder prediction 423 444 - -
Aed7g0567 586 CDD PIN_GEN1 2 213 - -
Aed7g0567 586 ProSiteProfiles Chromo and chromo shadow domain profile. 371 431 IPR000953 -
Aed7g0567 586 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 480 IPR006084 -
Aed7g0567 586 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 215 351 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0567 Aed-Chr7 4135622 4145618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0567 1 251 Core DNA Replication Machinery Family AT5G26680 24.621 1.18e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0567 K15338 - gmx:100806919 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0567 7 4135622 4145618 Aed7g0567 7 4135622 4145618 ECH