Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0561 ATGAGCATCATAGTACTCTTCTTCCTGCTGGTAACATCTTCCGTGTTCCGCACCACACGCGCTCAATCCCCTCCAGCACCACTAGTGACTCACGTCGTTTCCAATGGCGCCGCCGCCCCCAGAGCAACATTTCCCATGTTACTCATCATCTTCGTCTTCGCCCTCTTCATCACTGCATTCTGCTCCATCTACATTCGCTACTGCTCCTACCAACAACCCCACGCGCTTCCGCAGTCCGCACCGCGCGGGTGCGGAATCGACCCGCGCGTGCTCGCCACGTGTCCCGTCATGTCCTACTCCGCAGCCAGAATGAAGACGCCGCAAAACGCCGCTTTTCAGTGCGCGGTGTGTCTGGTGGAGTTCGACGACGCCGACAGCCTCCGGTTACTGCCCAAGTGCGGCCACGTGTTCCACCCGGCCTGCATCGACACGTGGCTCGCGGCGCACGTGACCTGCCCCGTGTGCCGCGGTGAAGTGAGCGTGGAAATCGAGGAGGAGACACGTGCGCGCCACATGTTAAATGAAAGTTCCGCGAGAGGCTTTGGGTTTGGGGTGCTTCTGAGGTCGCATTCGACGGGTCACTCTTTGGAGAGATTCACTCTGAGGTTGCCCAAGGAAGTGACGAAGAACATTCTGGAAAACGGTGAACGCGGGAGCGTGATCACGAGGATGAAGCGTTCGGCGAGTTACGACGTCGTTTTGCGGAGTGTGGAAGGGGGTGAGGGTAGTAGTAATAGTAATAGCAAAGGGAAGAGTAATTATAATGATAATAACCAGTGGGTTTTGTCAATGACGCCTTCCTTCGTTTCTCGCGGTTCGGATTCGTCGAATGTTGGAACTGCGTGTCCGGGGATTCTGAGGTTTTGGGGTGCTTCTGTCGTGAGGGAAGAGAAAGAGTGTCAAGGGAGAACGGTTTTCCGTTGTGCAGTTGGATTTGGTGGTGTCTCCTTTTGTTTGAACACATGGAACAAAACAGAGTTTGGGTTTTGTTGTACAGTGTACGAGCTCTTTCTACGTGGCACTAGGCACAAGATATTATTTTCATCTATGTTGACATTATGTTATGAACCACTCGAATTAAACAAGAACCCGACGCGAAATGTGGTTGAAGAATTGGGACCAGCTGGGGAAAACGTGTTATGGTTGGTGGAAGGAGTGATTGAAAGTTTAGATTACCGGAAAATGCAAATGGACCCATAA 1200 0.5258 MSIIVLFFLLVTSSVFRTTRAQSPPAPLVTHVVSNGAAAPRATFPMLLIIFVFALFITAFCSIYIRYCSYQQPHALPQSAPRGCGIDPRVLATCPVMSYSAARMKTPQNAAFQCAVCLVEFDDADSLRLLPKCGHVFHPACIDTWLAAHVTCPVCRGEVSVEIEEETRARHMLNESSARGFGFGVLLRSHSTGHSLERFTLRLPKEVTKNILENGERGSVITRMKRSASYDVVLRSVEGGEGSSNSNSKGKSNYNDNNQWVLSMTPSFVSRGSDSSNVGTACPGILRFWGASVVREEKECQGRTVFRCAVGFGGVSFCLNTWNKTEFGFCCTVYELFLRGTRHKILFSSMLTLCYEPLELNKNPTRNVVEELGPAGENVLWLVEGVIESLDYRKMQMDP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0561 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 165 IPR013083 -
Aed7g0561 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 2 162 - -
Aed7g0561 399 SUPERFAMILY RING/U-box 110 162 - -
Aed7g0561 399 Pfam Ring finger domain 113 156 IPR001841 -
Aed7g0561 399 PANTHER RING FINGER DOMAIN-CONTAINING 2 162 - -
Aed7g0561 399 PANTHER RING FINGER DOMAIN-CONTAINING 165 228 - -
Aed7g0561 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 165 228 - -
Aed7g0561 399 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Aed7g0561 399 CDD RING-H2_PA-TM-RING 113 156 - -
Aed7g0561 399 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0561 Aed-Chr7 4105483 4107496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0561 3 287 Rapid Response to Elicitors AT3G05200 31.361 1.79e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0561 K10664 - gmx:102665105 368.237