Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0543 ATGGACGGTCATAGCGATATGGGACTAATCGGAGAAAGTTTTGACACCAGTAATTTGCTGGGGAGGCTGAGGGATGATGACTATGAAAGCCGGTCTGGAAGTGATAATTTTGAGGGCGGATCTGGTGATGAACAAGATGTTGGGGATGATCAGCCACAGAAGAAGAAGAAGAAATACCATAGGCACACTCCTCAACAAATTCAGGAGCTTGAAGCGTTTTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACCGATCTCAGCAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACTCAAATGAAGACTCAACTGGAGCGCCATGAGAACATGATTCTCAGGCAGGAGAATGACAAGCTGAGAGCTGAGAACAGTGTAATGAAGGATGCTTTGGCAAATCCGTTATGCAACAACTGTGGCGGGCCAGCCATTCCGGGTCAAATCTCCCTTGAGGAGCACCAGACTAGAATTGAGAATGCCAGACTGAAGGATGAACTGAACCGAATATGTGCATTGGCAAACAAGTTCCTGGGCCGGCCCCTCTCGACACTGGCTCTGCCGCCCTCTAACTCTGGCCTCGAGCTTGCTATTGGAAGAAATGGAATCGGTGGTGGTGGTTCGAGCAACTTCGGCATGTCCTTGCCAATTGGATTCGATGATCGATGGTCGGAGATGTTTTCGACTATGATTGCGAGTGCTGCTACTCTAGATGTGCTATCTAGTAGCACAGGTGGATCCAGAAATGGAGCTTTGCAAGTGATGCTTGCTGAGGTTCAATTGATTTCTCCACTAGTCCCTGCTCGTCAATTGAGTTTCCTCAGGTTTTGCAAGCAGCATGCCGAAGGTGTATGGGCTGTGGTTGATGTTTCTGTTGACATTGGTCGTAATGTTACCAACTCACACCCATTAATGAGCTGCAAGAGGCTTCCCTCAGGCTGTGTTATTCAGGACATGCCCAATGGTTTCTCCAAGATTACTTGGATTGAACATTCCCAGTATGATGAGAGTGTGGTTCACCAACTTTATCGGCCATTGGTTAGTTCTGGAATTGGCTTTGGTGCTAATAGATGGATTGCAACCCTCCTAAGGCAGTGTGAGTGCCTGGCAATCCTCATGTCCCCATCTGAGGACCCCTCAGCGATTAGCCCAACCGGTAGGAGAAACATGCTGAAGATGGCACAACGCATGACCGAGTACTTCTGCTCAGGGATCTGTGCTTCCTCTGGACGCAAGTGGGACTTACTGCACATTGGTAATCTGTCTGAAGACATAAGAATCATGGCCCAGAAAGTCGTGAATGACCCAACTGAGGGTCCTGGGATTGTGCTCAGTGCTTCAACTTCTGTCTGGATGCCGGTGTCACGCCAGAGGGTGTTTGATTTTCTGCGTGATGAAAACTTTAGATCCGAGTGGGACATGCTGTCCAAAGTTGGACCTATGAAGGAGATGCTCCATATTTCTAAAGGACAAGAACGTGGAAACTGTGTTTCCATCTATCATTCTTCTGGTAATGGCGAGAACAGTGTGCTATTTCTGCAAGAGTCCTGGACCGATGCCTCCGGTTCGATGGTGGTGTATTCCCCTATCAACATGCAAGCCTTGAACATGGTGATGAACTCTGGAGATTCATCCTTTGCCTCTATCCGTCCGTCGGGCTTTGTTATATTGCCAGATGGTGCTTCGAACAATGGTGATGATGGTGACGCTACTGGTGGTGGTGGCAGCTGCATGCTTACAGTTGGGTTACAAATGTTGCAGAGTGGCGTCCATTCAACCAAGTTCTCAATGGAGTCAATTGAAACTGTCAGTACCCTCATCACATGCACCATTCAGAAGGTCAAAGATGCACTAGGTGTTGCATGA 1890 0.481 MDGHSDMGLIGESFDTSNLLGRLRDDDYESRSGSDNFEGGSGDEQDVGDDQPQKKKKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENDKLRAENSVMKDALANPLCNNCGGPAIPGQISLEEHQTRIENARLKDELNRICALANKFLGRPLSTLALPPSNSGLELAIGRNGIGGGGSSNFGMSLPIGFDDRWSEMFSTMIASAATLDVLSSSTGGSRNGALQVMLAEVQLISPLVPARQLSFLRFCKQHAEGVWAVVDVSVDIGRNVTNSHPLMSCKRLPSGCVIQDMPNGFSKITWIEHSQYDESVVHQLYRPLVSSGIGFGANRWIATLLRQCECLAILMSPSEDPSAISPTGRRNMLKMAQRMTEYFCSGICASSGRKWDLLHIGNLSEDIRIMAQKVVNDPTEGPGIVLSASTSVWMPVSRQRVFDFLRDENFRSEWDMLSKVGPMKEMLHISKGQERGNCVSIYHSSGNGENSVLFLQESWTDASGSMVVYSPINMQALNMVMNSGDSSFASIRPSGFVILPDGASNNGDDGDATGGGGSCMLTVGLQMLQSGVHSTKFSMESIETVSTLITCTIQKVKDALGVA 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0543 629 SUPERFAMILY Bet v1-like 229 376 - -
Aed7g0543 629 ProSiteProfiles START domain profile. 230 379 IPR002913 GO:0008289
Aed7g0543 629 Gene3D - 230 363 IPR023393 -
Aed7g0543 629 Gene3D - 43 129 - -
Aed7g0543 629 CDD START_ArGLABRA2_like 229 375 - -
Aed7g0543 629 Pfam START domain 230 376 IPR002913 GO:0008289
Aed7g0543 629 SMART START_1 126 376 IPR002913 GO:0008289
Aed7g0543 629 SMART HOX_1 55 117 IPR001356 GO:0003677
Aed7g0543 629 SUPERFAMILY Bet v1-like 393 593 - -
Aed7g0543 629 Coils Coil 107 134 - -
Aed7g0543 629 MobiDBLite consensus disorder prediction 19 33 - -
Aed7g0543 629 MobiDBLite consensus disorder prediction 1 63 - -
Aed7g0543 629 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 229 627 IPR042160 -
Aed7g0543 629 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 228 IPR042160 -
Aed7g0543 629 CDD homeodomain 60 113 IPR001356 GO:0003677
Aed7g0543 629 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Aed7g0543 629 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 229 627 - -
Aed7g0543 629 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 228 - -
Aed7g0543 629 SUPERFAMILY Homeodomain-like 38 113 IPR009057 -
Aed7g0543 629 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Aed7g0543 629 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0543 Aed-Chr7 3997530 4001353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0543 1 628 Homeobox Transcription Factor Family AT5G52170 47.757 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed7g0543 START 2.1e-37 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0543 K09338 - gmx:100820113 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2235 1 18614904 18619999 Aed7g0543 7 3997530 4001353 ECH
Aed6g0151 6 1343787 1349771 Aed7g0543 7 3997530 4001353 ECH
Aed7g0543 7 3997530 4001353 Aed7g0543 7 3997530 4001353 ECH