LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g0524	ATGGCCATTGCAACAGCAACACTCTGTCACCATCACCCTCCACTCCTCCTCCATTCTCATTCTTATTCTCCTCTTTCCATCAAAATTACCAAACCACCCTTCTCTTTCCGCCTCTCGCCTCGACCCCTTCTCCACGCGCGGTTCCTCCTCCCTCCGCCGCGCGCCTACGTCGCTGCGCCGGCGTCCGACCCCAATTTCGCCGACCCGGACCCGAAACTCGGAGGGTCGGACCCGGAGAACGCGAAGCCGCGGAACGTGGTCACGTGGAGCCTCCTCTGCACGCTTCTGATGAAGCACAAGCTTCGCCTCGCCCTCGCGGTCGCAACGCTCTTCGCCTGCTCCACCTGTACCCTATCCATGCCCATCTTTTCCGGACGGTTTTTTGAAATTCTAATTGGCGCTAGACCTGAGCCGTTATGGAAGCTGCTTAGTAAAATTGGAGTTCTGTATGCCCTGGAGCCACTTTTGACTATTATTTTTGTCATAAACATGAACATAGTGTGGGAGAAAATTATGTCAACACTAAGAGCTCAGATCTTTGGAAGAATATTGATTCAAAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTTACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATAGTCAGTGAGAATGTCTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGCAAGCAACTCTACACCAATGAGAACTTGCATTTTGCTGCTCATGTTCGTCATTGGAACAATATTCATACTTTTTACTTTATCCCCACAACTGGCACCCATTCTGGGTGTTCTGATGCTTGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCCACTTTGCCAGTTTTTAAAGCACATGGAATGGCCCAAGCATCTATATCTGATTGTGTAACAGAAACATTTTCTGCTATTCGAACGGTAAGATCATTTGGTGGTGAAAAGCGCCAGATGTTCACATTTGCTAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGAACTTTCAAATCTGTAAATGAATCGTTGACTAGAGTTGCTGTTTATATTTCATTAATAGCATTATATTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAGCTCTCTGTTGGAACCATGGCATCTTTTATTGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATTCTTTTGGAGATCTTCGTGGAACTTTTGCTGCTGTTGATAGGATCAACTCTGTTTTGTCTGGAGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAACCGTGGATGATGAAAGCTATAAATTGGTCATATCTAATATTTCTGCTGAGAATAACCAAAAAAATTATTTGCATTACATGTCAGCTCTTAAAACATCAAGCAATGTGTTTAGCTTAGCATGGTCTGGAGACATTTGTCTTGAAGATGTATATTTCTCTTATCCTTTACGGCCAGATGTGGAAATCTTGCGAGGCTTAAATTTAAGACTAAAACATGGAACTGTAACTGCACTGGTGGGTCCTAGTGGTGCAGGAAAAAGTACAGTAGTACAGCTATTGTCTCGTTTTTATGAGCCAACAAGTGGTTGTATAACAGTTGCAGGAGAGGATCTCCGAACATTTGACAAGAGTGAATGGGCTCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGAAGATGTTTCTAAAGAAGATGTGATTAAGGCCGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTATGATACACTTGTTGGAGAGCGTGGAGGCCTACTGAGTGGAGGACAGAGACAGAGAATTGCTATTGCACGGGCTCTCCTAAAGAATGCTCCTATCCTTATACTTGATGAGGCTACCAGTGCACTGGATGCTGTTAGTGAGCGATTGGTCCAGGATGCTCTCAACCATTTGATGAAGGGAAGGACAACATTAGTAATAGCTCACCGATTAAGCACAGTCCAAAATGCATATCAAATTGCAGTCTGTTCTGAGGGGAGGATCGCAGAACTAGGCACCCATTTTGAGCTATTGGCTAAGAAAGGCCAATATGCTTCATTGGTTGGCACACAAAGGCTTGCATTTGAATAA	2175	0.4354	MAIATATLCHHHPPLLLHSHSYSPLSIKITKPPFSFRLSPRPLLHARFLLPPPRAYVAAPASDPNFADPDPKLGGSDPENAKPRNVVTWSLLCTLLMKHKLRLALAVATLFACSTCTLSMPIFSGRFFEILIGARPEPLWKLLSKIGVLYALEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEASNSTPMRTCILLLMFVIGTIFILFTLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGMAQASISDCVTETFSAIRTVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNSFGDLRGTFAAVDRINSVLSGVQVDDALAYGLERELKQKTVDDESYKLVISNISAENNQKNYLHYMSALKTSSNVFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKHGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIAELGTHFELLAKKGQYASLVGTQRLAFE	724

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g0524	724	Pfam	ABC transporter	498	649	IPR003439	GO:0005524
	Aed7g0524	724	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	480	718	IPR003439	GO:0005524
	Aed7g0524	724	SUPERFAMILY	ABC transporter transmembrane region	92	411	IPR036640	GO:0005524\|GO:0016021
	Aed7g0524	724	CDD	ABC_MTABC3_MDL1_MDL2	480	719	-	-
	Aed7g0524	724	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	104	403	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Aed7g0524	724	Gene3D	-	476	720	IPR027417	-
	Aed7g0524	724	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	471	719	IPR027417	-
	Aed7g0524	724	SMART	AAA_5	507	681	IPR003593	-
	Aed7g0524	724	ProSitePatterns	ABC transporters family signature.	621	635	IPR017871	GO:0005524
	Aed7g0524	724	Pfam	ABC transporter transmembrane region	236	390	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Aed7g0524	724	Pfam	ABC transporter transmembrane region	105	218	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Aed7g0524	724	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	51	722	IPR039421	-
	Aed7g0524	724	Gene3D	ABC transporter type 1, transmembrane domain	76	417	IPR036640	GO:0005524\|GO:0016021
	Aed7g0524	724	PANTHER	ABC TRANSPORTER B FAMILY MEMBER 28	51	722	-	-
	Aed7g0524	724	CDD	ABC_6TM_TAP_ABCB8_10_like	106	411	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g0524	Aed-Chr7	3800038	3806480	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g0524	477	724	Calmodulin-binding Proteins	AT2G36910	55.378	3.31e-75	263

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g0524	K05657		-	gmx:100791034	1251.11

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed7g0524	7	3800038	3806480	Aed7g0524	7	3800038	3806480	ECH