Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0519 ATGGACGTGGACGGTGGCAACAAGCGCGTGTACAACCGCCTCAGTGGGGACACGAAGCACCAGAAAGTGTGCTACCACTGGCAAGCGGGGAAGTGCAATCGCTACCCGTGCCCCTTCCTGCACAGCGAATTGCCCGCTTCGCACCACGCCAATGGCGCCACTTCCAAGCGGGCCTACGACAATTCGGGATTTTCGGGCCCGCGCCGCACCCCCAATTTCAACAACACGTGGGGCCGCGGCGGGGGCCGTGGCGGAGGACGCGGTGGTGGCAGTGCCGGTAGAGGAGGGGTGGTGGTGAAGGAGGAGAAAGTTTGTAATTATTGGATTCAGGGGAATTGTGGTTACGGAGAGAGGTGCAAGTTTCTTCACTCTTGGAATGTTGGGGATGGGTTTTCTTTGCTCACCCAGCTTGAAGGGCATCAGAAGGCTGTGAGTGCAATTGCCTTTCCCTCTGGTTCAGATAAGCTTTACACTGGAAGCACTGACGAGACTGCAAGGATTTGGGACTGCCAATCTGGAAAGGTGTGTGTAGGTGTGATCAATCTTGGTGGTGATGTTGGTTGTATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAACTTTGTCAAGGCCTGGAACACACAAAATTTAGCGGAGCTAAGTCTAAATGGCCCTGTTGGACAAGTTTATGCACTTGTTGTAAATAATGATATGCTCTTTGCTGGTACCCAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGCTACCAACAACTTTGAGCCGGCTGCATCACTTAAAGGTCATTCTCGGGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTTTACTCTGGTTCAATGGACAATACAATAAGAGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTTCATTGGACAAAACAGTGAAGGTATGGTATGCTACTGAAAGCGGAAATTTGGAAGTGACATTTACTCACAATGAAGAACATGGTATCCTTACCCTATGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTGTGCGCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGCAAGATATTAACAAAACAAGAGGTACGTGCAATTCAGACAGGGCCTAACGGCATATTCTTCACTGGTGATGGTACTGGCGAAGTAAGAGTGTGGAATTGGATAGCGGAGGCAACTACTACAGTCCAATAA 1287 0.4864 MDVDGGNKRVYNRLSGDTKHQKVCYHWQAGKCNRYPCPFLHSELPASHHANGATSKRAYDNSGFSGPRRTPNFNNTWGRGGGRGGGRGGGSAGRGGVVVKEEKVCNYWIQGNCGYGERCKFLHSWNVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKVCVGVINLGGDVGCMISEGPWVFVGIPNFVKAWNTQNLAELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFNVATNNFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTFTHNEEHGILTLCGMHDSQGKPILLCACNDNTVRLYDLPSFAERGKILTKQEVRAIQTGPNGIFFTGDGTGEVRVWNWIAEATTTVQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0519 428 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Aed7g0519 428 SMART c3hfinal6 101 125 IPR000571 GO:0046872
Aed7g0519 428 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Aed7g0519 428 ProSiteProfiles Zinc finger C3H1-type profile. 100 126 IPR000571 GO:0046872
Aed7g0519 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 300 IPR001680 GO:0005515
Aed7g0519 428 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Aed7g0519 428 Pfam WD domain, G-beta repeat 133 169 IPR001680 GO:0005515
Aed7g0519 428 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Aed7g0519 428 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 426 - -
Aed7g0519 428 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Aed7g0519 428 Gene3D - 116 215 IPR015943 GO:0005515
Aed7g0519 428 PANTHER - 1 426 IPR044715 -
Aed7g0519 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 137 169 - -
Aed7g0519 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 169 IPR001680 GO:0005515
Aed7g0519 428 MobiDBLite consensus disorder prediction 55 94 - -
Aed7g0519 428 Pfam CCCH-type zinc finger 103 123 IPR041367 -
Aed7g0519 428 SMART WD40_4 335 378 IPR001680 GO:0005515
Aed7g0519 428 SMART WD40_4 254 291 IPR001680 GO:0005515
Aed7g0519 428 SMART WD40_4 208 247 IPR001680 GO:0005515
Aed7g0519 428 SMART WD40_4 381 418 IPR001680 GO:0005515
Aed7g0519 428 SMART WD40_4 130 169 IPR001680 GO:0005515
Aed7g0519 428 SMART WD40_4 294 331 IPR001680 GO:0005515
Aed7g0519 428 SUPERFAMILY CCCH zinc finger 101 124 IPR036855 GO:0046872
Aed7g0519 428 Gene3D - 216 427 IPR015943 GO:0005515
Aed7g0519 428 SUPERFAMILY WD40 repeat-like 131 419 IPR036322 GO:0005515
Aed7g0519 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Aed7g0519 428 MobiDBLite consensus disorder prediction 55 77 - -
Aed7g0519 428 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Aed7g0519 428 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Aed7g0519 428 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0519 Aed-Chr7 3771089 3777660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0519 233 418 Miscellaneous Gene Families AT5G08390 26.020 3.82e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed7g0519 WD40 8.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0519 - - gmx:100775542 806.594