Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0489 ATGCCGTCTCTCGTTCCCCTCTCCAACGACGCCGTTCCGAGCAAGTCCCCAAAAGACAAGACGAAGAAGAAAGAGAAGAGGAGCAAGGATGAGAAGAATAAGAAGAACACGCCCTCGAACGATGCCGTTTCGGAGCCTCCGAGCCCGAAGAAGCGCAAGAAGAGTTGGGCTGACGAAGAAGAGGAGCAGCAGAAGAGCGAGACCAGCTCGGAGCTAGTGGACCCCGCCGAGGAGAGTTTGAAATCTAATAAGAAGAAGGCGAAGCTCGCTGACGAAGAAGAAGAAGTTGCGAAGGGTGAAGACTTGAACGCGGTTTCCAATTTCAGGATATCAGAGCCGTTGAGGAAAAAATTGAAGGAAAATGCGATCGAAGCGCTGTTCCCCATTCAGGCCATGACCTTCGACACCATTCTCGATGGCTCCGATTTGGTTGGTCGCGCGCGCACCGGTCAGGGGAAAACTCTGGCTTTTGTGTTGCCCATATTAGAGTCTTTGACTAATGGTCCCGGTAAAGGTGCGAGAAAGACTGGTTATGCGAGGCCTCCGAGTGTACTTGTGCTTTTACCTACCAGGGAATTGGCCTGTCAGGTTTATGCTGATTTTGAAGTTTATGGTACCGTGATGGGATTGAGCTCTTGCTGTTTATATGGTGGAACTCCATATCATGCTCAAGAGATTAAGCTCAGGAGAGGTGTTGATGTTGTTATCGGAACACCTGGTCGTGTAAAGGATCATATAGAGAGGGGAAACCTTGACCTGAGCCATCTAAGGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGCTTTGTTGAAGATGTTGAACTCATTTTAGGTAAGGTGCAGGATGTTGGTAAAGTTCAGACACTTCTTTTTAGTGCAACTTTGCCAGTCTGGGTTAAACAAATTTCTATGAAGTTTCTGAAACCAGAAAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGTATGAGTTCTACCATGTCTCAGATTATACCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAAAAAAAGGAGACCGCCTCTGAGCTTGCAGGGTTGTTGACAGGAGCAAGGGCTCTCCATGGTGACATACAACAGTCACAACGGGAGGTTACATTATCAGCTTTTAGATCTGGGAAATTCATGACATTGGTAGCCACAAATGTGGCTGCTAGAGGTCTGGATATTAATGATGTTCAATTGATTATCCAGTGTGAGCCTCCACGGGAAGTAGAAGCCTATATCCACCGATCAGGGCGCACAGGAAGGGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAGGTCGTTAAGAATATCTCAAATAGAAAGGGAATCCGGTGTGAAATTTGAACGTGTATCTGCACCTCAGCCTGATGATATTGCAAAAGCTGCTGGTGTGGAAGCTGCTGCCAAAGTTACCCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAACAAATCTGGTTTATCAGCTGTTGAGTTACTAGCAAAAGCTCTTGCCAAGGCTGCAGGTTTTACAGATTTAAAGAAAAGATCACTTCTGGCTTCCAGGGAGGATTATGTTACAGTACTTTTTCAGACTGGAAGACCTTTGTACTCTCCTATCCATACACTTGGACTCCTGAAGAAATTTTTGCCCGAGGAGAAGGTTGAGGCAGTACAGGGTCTGCAGAATGACCCTAATGTAAGCCTAGAGGTGGTCAAAGCATTACCACCTTTGCTGGAAAGAGAGCTTTCAAGAGGACCCAGATTTGGTGGTGGTCGCTGGAATAGTGGTGGGAATAGGTTCTCCGGTGGAAGAGGTGGCAGGAATGGGGGATTTTCGGGTCAGAATAATAGGTTTTCAAATGGTTTTAAAGGTGGGAGAGGTAGGTAA 1977 0.4633 MPSLVPLSNDAVPSKSPKDKTKKKEKRSKDEKNKKNTPSNDAVSEPPSPKKRKKSWADEEEEQQKSETSSELVDPAEESLKSNKKKAKLADEEEEVAKGEDLNAVSNFRISEPLRKKLKENAIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPGKGARKTGYARPPSVLVLLPTRELACQVYADFEVYGTVMGLSSCCLYGGTPYHAQEIKLRRGVDVVIGTPGRVKDHIERGNLDLSHLRFRVLDEADEMLRMGFVEDVELILGKVQDVGKVQTLLFSATLPVWVKQISMKFLKPEKKTADLVGNEKMKASTNVRHIVLPCMSSTMSQIIPDIIRCYSSGGRTIIFTEKKETASELAGLLTGARALHGDIQQSQREVTLSAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVMLYDPRRSLRISQIERESGVKFERVSAPQPDDIAKAAGVEAAAKVTQVSDSVIPAFKSAAEELLNKSGLSAVELLAKALAKAAGFTDLKKRSLLASREDYVTVLFQTGRPLYSPIHTLGLLKKFLPEEKVEAVQGLQNDPNVSLEVVKALPPLLERELSRGPRFGGGRWNSGGNRFSGGRGGRNGGFSGQNNRFSNGFKGGRGR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0489 658 MobiDBLite consensus disorder prediction 618 658 - -
Aed7g0489 658 MobiDBLite consensus disorder prediction 15 38 - -
Aed7g0489 658 Gene3D - 329 559 IPR027417 -
Aed7g0489 658 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 488 IPR001650 -
Aed7g0489 658 MobiDBLite consensus disorder prediction 46 95 - -
Aed7g0489 658 Pfam DEAD/DEAH box helicase 127 304 IPR011545 GO:0003676|GO:0005524
Aed7g0489 658 SUPERFAMILY RNA-binding domain, RBD 542 590 IPR035979 GO:0003676
Aed7g0489 658 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 260 268 IPR000629 -
Aed7g0489 658 MobiDBLite consensus disorder prediction 1 97 - -
Aed7g0489 658 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 606 - -
Aed7g0489 658 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 38 606 - -
Aed7g0489 658 SMART ultradead3 122 334 IPR014001 -
Aed7g0489 658 CDD SF2_C_DEAD 331 457 - -
Aed7g0489 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 463 IPR027417 -
Aed7g0489 658 Pfam GUCT (NUC152) domain 538 590 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aed7g0489 658 CDD DEADc 114 314 - -
Aed7g0489 658 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 316 IPR014001 -
Aed7g0489 658 Gene3D - 47 316 IPR027417 -
Aed7g0489 658 SMART helicmild6 367 448 IPR001650 -
Aed7g0489 658 Pfam Helicase conserved C-terminal domain 348 448 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0489 Aed-Chr7 3499489 3505293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0489 140 485 Eukaryotic Initiation Factors Gene Family AT1G72730 30.056 1.26e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0489 K16911 - vvi:100258263 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0489 7 3499489 3505293 Aed7g0489 7 3499489 3505293 ECH