Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0395 ATGAACTACGTATCCTTGCAAAGAATACTGCGCAGTTGTGCAAGCCTTGACCAGCTAAAACGAATCCATGCACTGTGTGTGACACTAGGATCCCTACACACCCCAAATCTCCAACAACCTTTGTCATGCAAGTTGCTTCAATGTTACAAGAATGTTGGAAAAACAGAACAAGCACAGAGGGTCTTTGATCAGATTAAGGATCCAGATATAGTATCATGGACCTGCCTCCTCAACCTCTACCTCCATTCTGGTCTTCCTTCCAAGTCCCTCTCAGCGTTTTCCCGTTGCTTGCATGTGGATCTAAGACCTGATAGCTTCCTTGTTGTTGCAGCTTTATCCTCATGTGGGCACTGCAAGGATTTGGTTAGAGGGAGGGTTGTTCATGGAATGGTGTTCAGGAATTGTTTTGATGAAAACCTAGTTGTGGGGAATGCTCTGATTGACATGTATTGTAGAAATGGTGTGATGGGAATGCCTGCATTGGTTTTTGAGAAGATGGGGTTCAAGGATGTGTTTTCTTGGACTACTTTGCTCCATGGGTATATATTGTGCAACAATCTGAGTGGTGCTCGTGAAGTGTTTGATGCAATGCCTGAAAGAAATTTGGTTTCTTGGACGGCTATGATTACTGGATGTGTCAAAGGAGGAGCTCCAGTTCAGGCTTTGGAGATGTTTAAACGGATGGAAGCTGATGATGGGGGAGTCTGTCTTCGTGCGGATTTGATGGTGGCGGTGCTCTCGGCGTGTGCTGATGTTGGGGCTCTTGATTTTGGTCAGTGCATACATGGTTGTGTTAAGAAAATTGGCCTCGAGTTGGATGTCACGGTGAGCAATGCTATGATGGATATGTACTCCAAAAGTGGGAGACTTGACTTGGCTGTAAGGATATTTGATGATATCTTGAAGAAGGATGTGTTTTCGTGGACTACAATGATATCAGGGTATGCTTATGACGGGGAAGGGCACCTTGCTTTGGAGGTTTTTTCTCTCATGTTAGAATCAAGGGTTACCCCTAATGAGGTAACCCTGTTGTCAGTTCTAACTGCTTGTAGCCATGCTGGGTTAGTTGTCGAGGGAAGAGTTTTGTTTACTAGAATGATTCAGTCCTGTTACATTAAGCCAACCATTGAGCACTATGGATGCATAGTGGATCTTCTCGGCCGAGCAGGATTGCTGGAAGATGCAAAAGAAGTGATTGAGATGATGCCAATTAGCCCTGATGCTGCTATATGGAGATCATTACTGACTGCTTGCTTAGTCCATGGGAATTTGAACATGGCTCAAATTGCAGGAAAGAAGATAATTGAACTTGAACCAAATGATGATGGCGTTTATATGCTTCTATGGAATATGTATTTTGTTGCTAATATGTGGAAGGAAGCCTCAGAGGTAAGGAAGTTGATGAGGGAAAGGAGGGTCAGAAAAAGGCCTGGGTGTAGTATGGTTGATGTGAATGGTGTTGTTCAGGAATTCTTTGCTGAAGACACATTGCTTCATGTTAGTGCAGAGCTTCGCCACATGCTAAAAGGAATTAAGGAGCACTCAGAAACATGTCATTTTTAA 1563 0.437 MNYVSLQRILRSCASLDQLKRIHALCVTLGSLHTPNLQQPLSCKLLQCYKNVGKTEQAQRVFDQIKDPDIVSWTCLLNLYLHSGLPSKSLSAFSRCLHVDLRPDSFLVVAALSSCGHCKDLVRGRVVHGMVFRNCFDENLVVGNALIDMYCRNGVMGMPALVFEKMGFKDVFSWTTLLHGYILCNNLSGAREVFDAMPERNLVSWTAMITGCVKGGAPVQALEMFKRMEADDGGVCLRADLMVAVLSACADVGALDFGQCIHGCVKKIGLELDVTVSNAMMDMYSKSGRLDLAVRIFDDILKKDVFSWTTMISGYAYDGEGHLALEVFSLMLESRVTPNEVTLLSVLTACSHAGLVVEGRVLFTRMIQSCYIKPTIEHYGCIVDLLGRAGLLEDAKEVIEMMPISPDAAIWRSLLTACLVHGNLNMAQIAGKKIIELEPNDDGVYMLLWNMYFVANMWKEASEVRKLMRERRVRKRPGCSMVDVNGVVQEFFAEDTLLHVSAELRHMLKGIKEHSETCHF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0395 520 Gene3D Tetratricopeptide repeat domain 319 517 IPR011990 GO:0005515
Aed7g0395 520 Gene3D Tetratricopeptide repeat domain 7 160 IPR011990 GO:0005515
Aed7g0395 520 TIGRFAM PPR: pentatricopeptide repeat domain 172 202 IPR002885 -
Aed7g0395 520 TIGRFAM PPR: pentatricopeptide repeat domain 278 305 IPR002885 -
Aed7g0395 520 TIGRFAM PPR: pentatricopeptide repeat domain 203 231 IPR002885 -
Aed7g0395 520 TIGRFAM PPR: pentatricopeptide repeat domain 306 340 IPR002885 -
Aed7g0395 520 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 516 - -
Aed7g0395 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Aed7g0395 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 303 IPR002885 -
Aed7g0395 520 Pfam PPR repeat 71 95 IPR002885 -
Aed7g0395 520 Pfam PPR repeat 203 230 IPR002885 -
Aed7g0395 520 Pfam PPR repeat 172 201 IPR002885 -
Aed7g0395 520 Pfam PPR repeat 144 166 IPR002885 -
Aed7g0395 520 Pfam PPR repeat 378 402 IPR002885 -
Aed7g0395 520 Gene3D Tetratricopeptide repeat domain 161 263 IPR011990 GO:0005515
Aed7g0395 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Aed7g0395 520 PANTHER OS02G0116100 PROTEIN 9 516 - -
Aed7g0395 520 SUPERFAMILY TPR-like 284 464 IPR011990 GO:0005515
Aed7g0395 520 Pfam E motif 421 482 IPR046848 -
Aed7g0395 520 Pfam PPR repeat family 303 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0395 Aed-Chr7 2883934 2885496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0395 5 496 Glycoside Hydrolase AT3G49170 33.665 1.67e-93 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0395 - - gmx:102666130 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0395 7 2883934 2885496 Aed6g1376 6 18350340 18356203 ECH
Aed7g0395 7 2883934 2885496 Aed7g0395 7 2883934 2885496 ECH