Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0375 ATGTCTTCTGCCGGCGGCGACAGCGGCGGCGCTACCTCCGGCGACCCTCGCCAATACTTCTGCCACCAGTGCGACGGCACGGTCAACGTCTCCCCTTCCCCCTCCTCCGATCTCGTCTGCCCCAATTGCAACGGCGGCTTCCTCGAAGAACTCGAAATCCCCAACCCTAACCCTCCCAATCCCTTCTTCGCCGACTTCCCCCTCGCTGGCACCGCCTCCATTCCCCTCGTCCTCCCCGGAGCCGCCGCCGCCCCTCCCTTCGACGATCTCTCCGCCCTCTTCGGCAACCGATCCGACGCCGCCGATGCCTTCAACCCCCTCGTCTTCCTCCAGAACTACTTCCAAACCCTAAGAGCCGGCGGCGGCGGAAACCTCCAACTCGTGATCGAGTCCGGCGACCCCGGCGGAGCGTTCCGCTTCCCCGGCGTCACCCACGGCGACTACTTCTTCGGGCCGGGCCTCGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCCAACCGCTACGGCACCCCGCCGGCCTCCAAGTCCGCCGTCGAGGGCCTGCCGGACGTCTCCGTCACCGACGAGCTGCTTGCGTCGGATTCCTCGCAGTGCGCCGTCTGCAAAGACACCTTCGAACTCGGCGAGACCGCGAAGCAGATCCCCTGTAAGCATATATATCACGCGGATTGCATTTTGCCGTGGTTGGAATTGCACAATTCTTGCCCCGTTTGTCGGTATGAGTTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCGTGGTGGAGGCGGTAGTGCTGGTGCCGGTGCTGGTGCTGGCAGTGGGGCGGCTCCCCAGGTGAATTGGAACATGGCATTGGGGGCTGGTGGTTCTGCGGATTCGCCCGGTGGCAGTGGTGCTGATAGTGCACAGCGGAGGAGGCTTAGGGTGTCTTTGCCATGGCCGTTTCGGCAATTTGTTTCTTCTGCTGAGACAAGTGCCAATAATGAAAACAATAACAACAGCAATAGCGATAGTGGAAATAATGGTATGAAGAGTTTTTTCAAATTTGCAGCATTTTGTTGA 1050 0.6057 MSSAGGDSGGATSGDPRQYFCHQCDGTVNVSPSPSSDLVCPNCNGGFLEELEIPNPNPPNPFFADFPLAGTASIPLVLPGAAAAPPFDDLSALFGNRSDAADAFNPLVFLQNYFQTLRAGGGGNLQLVIESGDPGGAFRFPGVTHGDYFFGPGLEELIQHLAENDPNRYGTPPASKSAVEGLPDVSVTDELLASDSSQCAVCKDTFELGETAKQIPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRARGGGGSAGAGAGAGSGAAPQVNWNMALGAGGSADSPGGSGADSAQRRRLRVSLPWPFRQFVSSAETSANNENNNNSNSDSGNNGMKSFFKFAAFC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0375 349 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Aed7g0375 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 11 320 - -
Aed7g0375 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 320 - -
Aed7g0375 349 Pfam Zinc finger, C3HC4 type (RING finger) 198 239 - -
Aed7g0375 349 MobiDBLite consensus disorder prediction 250 269 - -
Aed7g0375 349 MobiDBLite consensus disorder prediction 281 300 - -
Aed7g0375 349 CDD RING-H2_RNF126_like 198 240 - -
Aed7g0375 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 246 IPR013083 -
Aed7g0375 349 SUPERFAMILY RING/U-box 182 246 - -
Aed7g0375 349 Pfam zinc-ribbon 18 51 IPR039525 GO:0061630
Aed7g0375 349 SMART ring_2 199 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0375 Aed-Chr7 2789482 2793764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0375 157 256 C3H Transcription Factor Family AT5G15820 54.000 3.13e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0375 - K11982 gmx:100784504 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0375 7 2789482 2793764 Aed7g0375 7 2789482 2793764 ECH