Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0371 ATGAGCGGAAAAGCTTCCGTTTCCAAGGATCTACACGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGATACCTGACAACAGGGAATGTGCAGACTGCAAGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGAGGTCCACAACTTTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATTAATGGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAGAATTACCACCAAATTTTGACAGAAATGGATATGGAGTCGAGAAATTTATTCGTTCCAAATATGTGGAGAAAAGATGGGCTTCGAAAGGTGGTGGACTACAACCAGCTTCAAAATCAGCTGAAATAGTCTTCAACTCAAATGAGTCACCAGTTGTTGGGATCAAGAGTCCTATTCAAAAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACGTGGCTCAAATTCGTCCTCCGATTTCGAGATCTCATGAGGTCTCCTCAGATTTGTATAAGAAGCATTCACCACCACCATTAAGGAGGCCATCTGCATCATTGGATTTTGATTATTCTAGGGGAAAGAACAATGGTACTGTTGATCCTTTTGGCTTGCTTTCTATCCATGAGGATAAACATAATTTCTCAACTACACCTTCTACCTGGACAACATTTGATTGTAGCTTCCACTTCTTCAGCATTCGTATTCATCTCGTCACTGCGAACTCACATCGTTATCAGTTAGTTAGCTCAGAGTTTCCTTTATCTTGTTTGCTACGAAGAAAAATGGAGAAACTAAGGCCACCGTGGGCTGTCAAGGCGATCATTGTGATCGTTTTCACTTCAATTCTCTTCCGATGCGTCTGCGGCGAAAACATCACCGTCGGTGGAGCTTCTGGCTGGGATATCCGTTCAAATATCCAAGCCTGGTCTTCTACGACAACGTTTAACATCGGTGACGATCTCGTTTTCACATACACGCCGATTCACGACGTGGTGGAGGTAAACCATCTAGGTTACGACACGTGTGCGATAGCGAACGCTCTGGCCACGTACGACAGCGGAGAGACTGTGATCCACTTGAGCGACGCGAGAACCCGGTACTTCGTGTGTGGCAGAATGGGCCACTGCCAACAGGGCCTTAAATTCCAGGTTCAAATTCTAGACCAGTCCAATAACGGAACCGCCGATGATCAAAACCAAAGCCCCAGCACCGGCAACGGCGGTTCTCCTCCGCCTCTTCCTCCTCCTCCTCCTCCTCCGCCAATTTCTCCGCCTCCTCATGAAGATGAACACCCACCAGCAGACGAGCCAGTGGCCGTGCCATCCCATTGTTCCCGCGCGGAGGAGCTCCTTGGGGTGGTGCCGTTGATTACGCTCGTAATCGTGCACGTGTTCGCTCGTGCTCCTTTCTTCTTCGCTTCTCCGCGTCTCCGTTAA 1497 0.4723 MSGKASVSKDLHAKHTKILEGLVKIPDNRECADCKTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQISFMQLMGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGGLQPASKSAEIVFNSNESPVVGIKSPIQKNRRLSLEESILVKHVAQIRPPISRSHEVSSDLYKKHSPPPLRRPSASLDFDYSRGKNNGTVDPFGLLSIHEDKHNFSTTPSTWTTFDCSFHFFSIRIHLVTANSHRYQLVSSEFPLSCLLRRKMEKLRPPWAVKAIIVIVFTSILFRCVCGENITVGGASGWDIRSNIQAWSSTTTFNIGDDLVFTYTPIHDVVEVNHLGYDTCAIANALATYDSGETVIHLSDARTRYFVCGRMGHCQQGLKFQVQILDQSNNGTADDQNQSPSTGNGGSPPPLPPPPPPPPISPPPHEDEHPPADEPVAVPSHCSRAEELLGVVPLITLVIVHVFARAPFFFASPRLR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0371 498 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Aed7g0371 498 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 249 IPR044520 GO:0005096
Aed7g0371 498 Pfam Plastocyanin-like domain 322 399 IPR003245 GO:0009055
Aed7g0371 498 SMART arf_gap_3 16 129 IPR001164 GO:0005096
Aed7g0371 498 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Aed7g0371 498 CDD Phytocyanin 311 406 - -
Aed7g0371 498 MobiDBLite consensus disorder prediction 411 426 - -
Aed7g0371 498 CDD ArfGap 19 119 - -
Aed7g0371 498 Gene3D - 309 412 IPR008972 -
Aed7g0371 498 MobiDBLite consensus disorder prediction 411 460 - -
Aed7g0371 498 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 138 IPR001164 GO:0005096
Aed7g0371 498 MobiDBLite consensus disorder prediction 427 447 - -
Aed7g0371 498 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Aed7g0371 498 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Aed7g0371 498 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Aed7g0371 498 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 249 - -
Aed7g0371 498 ProSiteProfiles Phytocyanin domain profile. 310 408 IPR003245 GO:0009055
Aed7g0371 498 SUPERFAMILY Cupredoxins 310 406 IPR008972 -
Aed7g0371 498 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0371 Aed-Chr7 2759687 2764205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0371 19 119 C2H2 Transcription Factor Family AT4G05330 48.598 3.38e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0371 K12486 - gmx:100802691 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0371 7 2759687 2764205 Aed7g0371 7 2759687 2764205 ECH
Aed5g2676 5 27255498 27258037 Aed7g0371 7 2759687 2764205 PCT