LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g0354	ATGGGTGATTCTCATTTTGCTCAAATGGAGATGCAGGACCAATTAGAAAGCACAAGATCTACCATATTTGGCTCAGCTAGTAACTGCCACTCCAACAGTGGAAAACAATCTGAAAATGCTGCCCATATACCTTCTGTTGGAAATAGCCATACTCCCAAGGTGAGGAAACCATATACCATTTCTAAACAAAGGGAGAAGTGGACAGAGGTAGAGCATCAAAAGTTTCTTGAAGCTTTGAAATTGTATGGTCGTGGCTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACTGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGAGGGAATCTGAGGGCAGTGCTGAGAGTTCTATACAACCAATTAACATACCTCCTCCTCGGCCTAAGAGGAAACCCCTGCATCCATATCCCCGTAAATCTGTTAACTCTTTCAGAGGACACACCATACCAAATGAAACAGAAATATCTCCATCTACAAACTTGTTAGTTACAGAGAAAGACACCCCATCTCCAACCTCGGTGCTGTCTATGGTTGGTTCGGAAGCATTTGGGTCTGTGTTTTCAGAGCAGACTAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCAGTCAGCTTATCACCTCCTGAAAAGGAAAATGATTGCATGACATCCAAAGCATCTGAGGAGGACGAGAAAGGATCACCAGCTTCACTTCCTTTATCCACTGTTTCTAACCCAAACATGTGCATGAAGCCTGAGTTTACTTCCAAGGACACTTTCATAGAAGATGCTGCCAATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGATAGGTAATCAGAAGTCACTGAACATAGATGATGATGGTAAGCCAATAACTGTGAAGTTTGATGAAGTAGATGATGTGGAGAATGAGAAGCTTGGCCAACCAGGAGAATCCAAGCTGGTAGATACACAATTATCACTAGGCGTGGTTAGTGGTAATGGGCCTATAACACCTGATGTTGATGGAGCTAATGTGATCAGCATAGAGCCCCCAAAGGAGAACCTATGCTTCGGTGAATGTGCACCTGATTCATCTTTTCCAGGGTGTAGTTTGTACCATGGCCTTCCAGCTTTCAACCTTGGGCCATGTAATCAGGTCCTAAATCCCTTGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACTGAATCAGTTTGTGACGTGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGCGTAAAAAATATAACGAGGAAGGAGGAGCTGCACCCCAGAAGCCTGCAAGGGGATTTGTACCATATAAAAGATGTTTAGCCGAAAGAGATGGGAATTCTTTAATTGTTGCCTTGGAAGAGAGGGATGGGCAAAGAGCTCGTGTGTGCTCATAG	1458	0.4355	MGDSHFAQMEMQDQLESTRSTIFGSASNCHSNSGKQSENAAHIPSVGNSHTPKVRKPYTISKQREKWTEVEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSVNSFRGHTIPNETEISPSTNLLVTEKDTPSPTSVLSMVGSEAFGSVFSEQTNRCLSPNSCTTDIHSVSLSPPEKENDCMTSKASEEDEKGSPASLPLSTVSNPNMCMKPEFTSKDTFIEDAANMPQTTSIKLFGRTVSMIGNQKSLNIDDDGKPITVKFDEVDDVENEKLGQPGESKLVDTQLSLGVVSGNGPITPDVDGANVISIEPPKENLCFGECAPDSSFPGCSLYHGLPAFNLGPCNQVLNPLPLRPSLKVRAREEESCCTGSNTESVCDVENQGKNSDAVDSKRKKYNEEGGAAPQKPARGFVPYKRCLAERDGNSLIVALEERDGQRARVCS	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g0354	485	MobiDBLite	consensus disorder prediction	428	443	-	-
	Aed7g0354	485	Gene3D	-	66	113	-	-
	Aed7g0354	485	MobiDBLite	consensus disorder prediction	422	450	-	-
	Aed7g0354	485	Pfam	Myb-like DNA-binding domain	64	107	IPR001005	-
	Aed7g0354	485	MobiDBLite	consensus disorder prediction	119	162	-	-
	Aed7g0354	485	MobiDBLite	consensus disorder prediction	1	60	-	-
	Aed7g0354	485	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	62	111	IPR006447	GO:0003677
	Aed7g0354	485	ProSiteProfiles	Myb-like domain profile.	59	109	IPR001005	-
	Aed7g0354	485	ProSiteProfiles	SANT domain profile.	62	113	IPR017884	-
	Aed7g0354	485	SMART	sant	63	111	IPR001005	-
	Aed7g0354	485	SUPERFAMILY	Homeodomain-like	58	112	IPR009057	-
	Aed7g0354	485	MobiDBLite	consensus disorder prediction	204	250	-	-
	Aed7g0354	485	PANTHER	SWI/SNF COMPLEX-RELATED	11	472	-	-
	Aed7g0354	485	MobiDBLite	consensus disorder prediction	204	223	-	-
	Aed7g0354	485	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	59	113	IPR017930	-
	Aed7g0354	485	CDD	SANT	66	109	IPR001005	-
	Aed7g0354	485	PANTHER	PROTEIN REVEILLE 7-RELATED	11	472	-	-
	Aed7g0354	485	MobiDBLite	consensus disorder prediction	10	56	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g0354	Aed-Chr7	2629767	2634830	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Aed7g0354		Myb_DNA-binding	3.1e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g0354	-		-	gmx:778089	827.78