Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0328 ATGTTAGTCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCGGATGCAGAAGTGGTGTCACTCTCGCCGAAGACTTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCGTGGAAGCTATTGAAGAGGGAGACACCAGTTGTGAGGAAGAGAGTGTTTGTGTGTCCTGAGCCAACTTGCTTGCACCATGACCCATGTCATGCCTTGGGTGATCTTGTTGGGATTAAGAAGCATTTCAGAAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGTTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGTGGCACCCGGGGCCACTCTTGTGATTGTGGCCGAGTTTTTTCAAGGGTGGAGAGTTTCATCGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCTCATGATCAATCTCAACCACTTCAACCATCTGCATGCCTTTCTAGAACAGCTTCAAGCCCAAGCCCTTCAAGTGAAACCAATTTCAGCACAGCTCCATGGCCAACAAGAATGATAATACCAAAGCCATCAGAACCACTTCCCACAATTTTCATGAATAATAACCCTACTACTGCTATCAATATCATTGCTGAAACCTCATCCAAGACCAACAAGCTCCTCCACCCCAACTTGGATCTTCAACTATCCACCCCCACCACCACCGACAACAACAAGAACAACAACAACACATCAAATGTTACAAACCCAGTTGATGCTGCAATAGCTACATCTCTATCACCTAAGGGGGGTGGCCATCATCATCGTGAGAATCATTCAACCCATTTGCAACTCTCAATTGGGTCATCGGATATGAGTGAGAAAAACGAATCAAACAGGTACTCATCGGAGAAAAGCAGCAACAGCAACATTAATGATCAGATGATGAAGCAGTCGAATAATATGGGGTTGTTGAGGGTTCAAGAGCAAGCGAGGGAGCAGTTGAGGATAGCCATGGCCGAGAAAGCATATGCTGAGGAAGCAAGGAAGCAAGCAAAGAGACAGATTGAAGTGGCGGAGCAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGCGGAACTCGACAAAGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCTACACTTGCAAGCAACAGTTCCAAGCTCGTAATGCAAATGCAAATGCAACCACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACCGAAGGAGGAGAAGTAGAAAACGATCATCATGCAAAGGATCATGGCAAAGACAACAACTAA 1467 0.469 MLVNNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPHDQSQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIPKPSEPLPTIFMNNNPTTAINIIAETSSKTNKLLHPNLDLQLSTPTTTDNNKNNNNTSNVTNPVDAAIATSLSPKGGGHHHRENHSTHLQLSIGSSDMSEKNESNRYSSEKSSNSNINDQMMKQSNNMGLLRVQEQAREQLRIAMAEKAYAEEARKQAKRQIEVAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCYTCKQQFQARNANANATTPDENSLVLSYVSSAITTEGGEVENDHHAKDHGKDNN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0328 488 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Aed7g0328 488 Gene3D Classic Zinc Finger 45 130 - -
Aed7g0328 488 PANTHER OS03G0310200 PROTEIN 2 471 IPR039288 GO:0009630
Aed7g0328 488 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Aed7g0328 488 MobiDBLite consensus disorder prediction 186 224 - -
Aed7g0328 488 MobiDBLite consensus disorder prediction 316 348 - -
Aed7g0328 488 MobiDBLite consensus disorder prediction 271 290 - -
Aed7g0328 488 MobiDBLite consensus disorder prediction 1 24 - -
Aed7g0328 488 MobiDBLite consensus disorder prediction 469 488 - -
Aed7g0328 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Aed7g0328 488 MobiDBLite consensus disorder prediction 472 488 - -
Aed7g0328 488 MobiDBLite consensus disorder prediction 297 348 - -
Aed7g0328 488 MobiDBLite consensus disorder prediction 190 222 - -
Aed7g0328 488 Coils Coil 369 424 - -
Aed7g0328 488 MobiDBLite consensus disorder prediction 1 44 - -
Aed7g0328 488 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 2 471 - -
Aed7g0328 488 SMART c2h2final6 134 161 IPR013087 -
Aed7g0328 488 SMART c2h2final6 98 128 IPR013087 -
Aed7g0328 488 SMART c2h2final6 57 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0328 Aed-Chr7 2378941 2382615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0328 20 476 C2H2 Transcription Factor Family AT2G01940 54.409 1.33e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed7g0328 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0328 K25871 - gmx:100800187 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2668 5 27197689 27199076 Aed7g0328 7 2378941 2382615 PCT