Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0322 ATGGAATCCGAGACTCTCCAACGACGCCGTTCAAGCAGTGGCAGCCACAACAACGCGCCTATCAGAGAGAAGAGGCCGAAGCGCAGCGAGGTACTCGCCAAGAAGAAAACCGTCGAAGAACTTATCAATACAGCACGTGCCGAAAAGGACCACCTCGCTCCTTTCCCCGCGTTTCGCCGTTTCCACGTTAACGGTCTCTCTGTGTGTTTGAAGTCAGGACATGGCAATAAACTTTCCTCACCTGTTAAGCATTATACTCAGAGTCTCCTTAAGCTAAACATGGAAGGACCATATGGATCTGAGTGGCCAGAGGAAGAAAAGGTGAAGCGCAGAGAAATGGTTGATCCTGAAGCACATTATGTATTTGTGCATGAGGTTGCCAATTCAAATGCTGATGAGATGACAACAGTGTTGACTGCAGCGGAGACTTCAACTTGTTGTCTTGATGATAGTGGCCCCTTGGTTGGATTTGTACAGTATCGCTTTGTTTTGGAAGAAGAGATACCAGTGCTTTATGTGTATGAATTACAGCTTGAACCTCGTATTCAGGGGAAAGGACTGGGGAAGTTTCTAATGCAACTTGTTGAGCTTATGGCACAAAAGAACTATATGGGTGCGGTCATGCTGACTGTTCAAAAGGCAAATGTATTAGCTATGGATTTCTATATAAGTAAGCTAAGATACATCATATCAGCTACGTCACCTTCAAAAGTCAATCCAATGATGGAGAAGAGTTATGAAATTCTTTGTAAAGCATTTAATGATGAAGCTAAAACTATTTTGGAGCCGCACGCCGACGGCGACGGAGTTAAGCGTTATGGTTCGACTGAAGCCGCGTTTGAGCGAAAGATGAAGAGAACGTTCCGGCTATCTTCCTCCACGCGCCTACTCCACTCGCAACCTCCCCCACGCGTCTTCAACCGAATACTGGGCTCCCTCGCGCAGGCGAGGCGCTTCCCCGCCGCGATTTTCCTCTGCGCCCAAACGGAGTATCGCGGCAGCAACGTGACTCCCTGCCACGTCACCCTCACCATCCTCATAAACTGCTTCTGCCACGTCGGCAGGATCGGTCTCGCCTTCTCCGTCTTCGGGAAGCTTCTGAAGCGCGGCCTCCCCTACGACGTCGTCACGCTCAACACCCTCATCAACGGCCTCTGCCTCAACGGCGCCGTTTTGACGGCGCTTAAGTTTCACGACGAAATAGCCGCGGAGGACTTCGAATTCAACGAAATCACCTACGGGACGTTAATTAACGGACTCTGTGATGTAGGGAAAACAAAAGCCGGTGTTACATTGTTGAGGACGATACAAGAGTGTGTTTTCAATGTTAAACCTAATGTGGTTATGTATAGTAGAGTTATCGAAGGTTTGTGTAAGGAAGGACTAGTGAATGAGGCGTGTGAGTGCTACTATGAAATGGTTGGTAACAGTGTTGAGCCTAATGCTTTCACTTTTAGGCCTCTTGTGAGAGCGTTGTGTGTCATGGGGCGGTTAAACGAGGCGGTTCGGATGGTGGAGGAGATGATTTCGAAGGGTGTTTATGTTGATGTTTACGTGTCTAGTGTTTTGATTGATGCCTTGTGTAAGAAGGGGATGGTGGGGGAGGCGCACAAGGTGTTTGATGAAATGATTAGGAGAGGCTGTGGGGTTAGTGTTGTTGCGTGCTCTGCCTTGATGGCTGGGTATTGTTTCAAGAACCAAGTGGATGAGGCTAGGAGGCTGTTTGATGCCGTTGTGGGACGCCCAGATGTTTCCAGTTATAATGTTTTGATTAACGGGTATTGCAAGGTTAGGAGGTTGGATGATGCAACCAAGTTGTTCGATGAAATGTGTGGGAGGAATGTGGTTCCCAATCTTGTGACTTACAATTTGTTGGTTGATTGCTTTTGTAAATGTGGGAGGGTGCCCATTGCTTGGAAGGTTGTTAAGGCGATGTGTGGGAGTGGTTTGGTGCCGGATGTTGTTACTTACAGTATCTTATTGGATGGTTTGTGCAAAGGGCAACTTCTTAATGAGGCAATTGCATTGTTTAATCAGCTGATTAAGAGGGGCATGGCACTTGATGTTTGGAGTTATAGTATATTGATTGATGGGTGTTGCAAGAATCAAAAGATAGGTGAGGCCATGAATATCTTGAAAGAAATGCTTTTAAGGAATTTGGTTCCCCATATCGTGACTTACACTGCTCTTATTGATGGCTTATATGGGAGAATCTCGTATGTGTGGCAGCTTGTTAATGAGATGCATGCCAATGCTCCACCCCCTGATGTTATCAATTATATTGATGCACTTTGCAGAAACCAGCATCTTCACTACAAATAA 2322 0.4664 MESETLQRRRSSSGSHNNAPIREKRPKRSEVLAKKKTVEELINTARAEKDHLAPFPAFRRFHVNGLSVCLKSGHGNKLSSPVKHYTQSLLKLNMEGPYGSEWPEEEKVKRREMVDPEAHYVFVHEVANSNADEMTTVLTAAETSTCCLDDSGPLVGFVQYRFVLEEEIPVLYVYELQLEPRIQGKGLGKFLMQLVELMAQKNYMGAVMLTVQKANVLAMDFYISKLRYIISATSPSKVNPMMEKSYEILCKAFNDEAKTILEPHADGDGVKRYGSTEAAFERKMKRTFRLSSSTRLLHSQPPPRVFNRILGSLAQARRFPAAIFLCAQTEYRGSNVTPCHVTLTILINCFCHVGRIGLAFSVFGKLLKRGLPYDVVTLNTLINGLCLNGAVLTALKFHDEIAAEDFEFNEITYGTLINGLCDVGKTKAGVTLLRTIQECVFNVKPNVVMYSRVIEGLCKEGLVNEACECYYEMVGNSVEPNAFTFRPLVRALCVMGRLNEAVRMVEEMISKGVYVDVYVSSVLIDALCKKGMVGEAHKVFDEMIRRGCGVSVVACSALMAGYCFKNQVDEARRLFDAVVGRPDVSSYNVLINGYCKVRRLDDATKLFDEMCGRNVVPNLVTYNLLVDCFCKCGRVPIAWKVVKAMCGSGLVPDVVTYSILLDGLCKGQLLNEAIALFNQLIKRGMALDVWSYSILIDGCCKNQKIGEAMNILKEMLLRNLVPHIVTYTALIDGLYGRISYVWQLVNEMHANAPPPDVINYIDALCRNQHLHYK 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Aed7g0322 773 Pfam PPR repeat family 445 493 IPR002885 -
Aed7g0322 773 Pfam PPR repeat family 338 386 IPR002885 -
Aed7g0322 773 Pfam PPR repeat family 582 631 IPR002885 -
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Aed7g0322 773 Gene3D - 62 255 - -
Aed7g0322 773 Gene3D Tetratricopeptide repeat domain 278 440 IPR011990 GO:0005515
Aed7g0322 773 Gene3D Tetratricopeptide repeat domain 580 669 IPR011990 GO:0005515
Aed7g0322 773 Gene3D Tetratricopeptide repeat domain 670 773 IPR011990 GO:0005515
Aed7g0322 773 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 292 734 - -
Aed7g0322 773 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 671 770 - -
Aed7g0322 773 TIGRFAM PPR: pentatricopeptide repeat domain 448 482 IPR002885 -
Aed7g0322 773 TIGRFAM PPR: pentatricopeptide repeat domain 691 722 IPR002885 -
Aed7g0322 773 TIGRFAM PPR: pentatricopeptide repeat domain 522 550 IPR002885 -
Aed7g0322 773 TIGRFAM PPR: pentatricopeptide repeat domain 620 654 IPR002885 -
Aed7g0322 773 TIGRFAM PPR: pentatricopeptide repeat domain 586 618 IPR002885 -
Aed7g0322 773 TIGRFAM PPR: pentatricopeptide repeat domain 655 688 IPR002885 -
Aed7g0322 773 TIGRFAM PPR: pentatricopeptide repeat domain 484 517 IPR002885 -
Aed7g0322 773 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Aed7g0322 773 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 148 223 IPR016181 -
Aed7g0322 773 Pfam PPR repeat 521 548 IPR002885 -
Aed7g0322 773 Pfam PPR repeat 411 437 IPR002885 -
Aed7g0322 773 Pfam PPR repeat 553 576 IPR002885 -
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 688 722 IPR002885 -
Aed7g0322 773 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 106 247 IPR000182 GO:0016407
Aed7g0322 773 Pfam Acetyltransferase (GNAT) family 142 222 IPR000182 GO:0016407
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Aed7g0322 773 CDD NAT_SF 148 210 - -
Aed7g0322 773 Pfam PPR repeat 649 679 IPR002885 -
Aed7g0322 773 Pfam PPR repeat 683 715 IPR002885 -
Aed7g0322 773 Gene3D Tetratricopeptide repeat domain 441 508 IPR011990 GO:0005515
Aed7g0322 773 Gene3D Tetratricopeptide repeat domain 509 579 IPR011990 GO:0005515
Aed7g0322 773 MobiDBLite consensus disorder prediction 1 29 - -
Aed7g0322 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0322 Aed-Chr7 2314418 2320436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0322 516 770 Glycosyltransferase AT1G05670 29.545 1.64e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Aed7g0322 Acetyltransf_1 1.5e-07 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0322 - - vun:114181437 744.962