Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0311 ATGGTGTTGGGGTGGAGAAGAAGGAAGGACCGCAAAGGTGGCAAACCCATCATAGAGTTGGTGACTCCCAACCACTTCAAGTGTCCAATCTCTCTCGACTTGATGAAAGATCCTGTGACATTATCAACAGGGATCACCTACGATAGGGAAAGTGTAGAGAGGTGGTTTCACGAAGGAAACATCACGTGTCCTGTTACCAACCAGGTTGTTAGAAACTTCGACATGATTCCAAACCATTCCCTCAGAATAATGATTCAAGATTGGTGTGTGGAGAATAGACAACATGGCGTGGAGAGGATTCCAACACCAAGGATACCAATTAGCCCATTTGAGGTTTCTGATGTTCTGATGCAAGTGAAGGCCTCAACAAGTGGTTTGGACCAACATGGCTGCCTTGGATTGGTGCAGAAACTGAAGAGGTGGGGTGGTGAGAGTGAGAGGAACAAGATGTGCATAGTGGACAATGGCGCACCTGTGGCATTGGCTTCATCCTTTGATGTATTTGCTAATGACTCTATTGAGAGGAACGTGGCGGTTCTTGAGGAGATTCTCTCAGCACTCAATTGGATGTTTCCACTTCAATTGGAGGCACAAAAGTCTTTAGGGTCTTTGGCTTCTCTAAGATGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAAGGAGCTTCTTTCATTTGGTGATGAGCAGCATGTGAAGGCCTTGTCACAAATTGAAGGTGTTAATGTCAATGATCTCTTGGTGGAGTTCATCAACAAGAGGATTAGCCCAACCATCACAAAGGCCTCATTGAGTGTGGTTTGGTACTTGGTCTCATCCTCCTCTTCCAATTCAAGTGAAAAGATGAGGTTGTCATTTGTTGAATTGGGTTTAGTTTCTTCTTTGCTTCACATTCTCATTGACTCATCAGATAAGAGCCTGTGTGAGAAGGCTGTGGCCATTTTGGACTCTCTATTCTCCTCTCAAGAAGGAAGGAACAAAGCCTGTGGGAATGATCTAACGATTCCTCTTTTGGTGAAGAAAATTCTGAGAGTTTCGCCGTTGACCACAGACTATTCTGTTTCTGCCATTTGGAAAATGTGCAAGTTTGGAGAAAAAGATGAAGATAAAGCCCTTGTTGAGGCACTTCAAGTTGGTGCCTTTCAAAAGCTGTTGCTGGTGTTGCAAGTTGGATGTGGTGATGAGACTAAGGACAAAGCAACTGAACTTCTCAAACTGCTCAATCCTTACAGGGCTGATATGGAATGCATAGACTCAGATTACAAAAATGTTAAGAGATCATTTTAA 1314 0.4384 MVLGWRRRKDRKGGKPIIELVTPNHFKCPISLDLMKDPVTLSTGITYDRESVERWFHEGNITCPVTNQVVRNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPISPFEVSDVLMQVKASTSGLDQHGCLGLVQKLKRWGGESERNKMCIVDNGAPVALASSFDVFANDSIERNVAVLEEILSALNWMFPLQLEAQKSLGSLASLRCMVWFLKHQDLSGKEKSIVALKELLSFGDEQHVKALSQIEGVNVNDLLVEFINKRISPTITKASLSVVWYLVSSSSSNSSEKMRLSFVELGLVSSLLHILIDSSDKSLCEKAVAILDSLFSSQEGRNKACGNDLTIPLLVKKILRVSPLTTDYSVSAIWKMCKFGEKDEDKALVEALQVGAFQKLLLVLQVGCGDETKDKATELLKLLNPYRADMECIDSDYKNVKRSF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0311 437 Gene3D - 116 416 IPR011989 -
Aed7g0311 437 ProSiteProfiles U-box domain profile. 21 95 IPR003613 GO:0004842|GO:0016567
Aed7g0311 437 SUPERFAMILY RING/U-box 21 98 - -
Aed7g0311 437 CDD RING-Ubox_PUB 26 68 IPR045210 -
Aed7g0311 437 Pfam U-box domain 23 93 IPR003613 GO:0004842|GO:0016567
Aed7g0311 437 PANTHER WDSAM1 PROTEIN 14 437 IPR045185 GO:0061630
Aed7g0311 437 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 437 - -
Aed7g0311 437 SUPERFAMILY ARM repeat 208 416 IPR016024 -
Aed7g0311 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 92 IPR013083 -
Aed7g0311 437 SMART Ubox_2 25 88 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0311 Aed-Chr7 2253681 2254994 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0311 5 437 U-box Gene Family AT5G37490 42.921 8.12e-112 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0311 - - gmx:100794340 729.554