Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0267 ATGGGCATCAAGGATCTTCTGAGGTTCATGAAACCTTACATTGAACCTGTCCACATCAAGAAGTACGCTGGAAAACGAGTGGGTATTGATGCGTATTCGTGGCTCCACAAAGGGGCTTATTCGTGCAGTATGGAGCTTTGTCTGGACTCTAATAGTGAAAGGAAGTTGCGCTACATTGAATATTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCAGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAGGCAGCAACTGAGGAAGAGAGGAACAGGCATGTTTTTTGTGAATCTCGTTTCTCAGTGCATGATTTGATTGTTTTAGGAAAAGAAGGGCTAATCGTGAATTGGCAATGTCTAAGCTCAAAGAAGGGAATGTTGGTGCAGCTTCAGAGCTCTTCCAGTTCAAGGATTTTTTTTTCTTTCTTTTGTGTGCAGAGAGCAGTGAATATTACTCCCGTTATGGCACATAAGTTAATTCAGACCCTAAAATCAGAGAACATTGAGTTTGTGGTAGCTCCATATGAAGCGGATGCTCAGTTAGCATACCTGTCTCACCTTGAGGTAAAAAATGGTGGAGTTGCAGCAGTGATCACAGAAGATAGTGATCTAATAGCATATGGCTGTCCAGCTTTTCATAGAAGTCCTGCATTTTGGATTGTAATTCGCAGTGGTTTTGAACAGATTATTTTTAAGATGGACCGTCATGGGAATGGTGAAAGAATAGAGTTAGAAAAAGTGTTTTCTGCTGAGTCTGGTAGACCTTCATTTCGGAGTTTCAATATGAAACTCTTCACAGGTATGTGCGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTAGTTTCCAAGTATCGGAACCTAGATCGTATCTTGTCTGTTCTTAAGATCGAGAAAGGAGACCAAGTCCCTGAAGATTATGCCAAATCCTTTCAAGAGGCTATTGCAGTTTTTGAGCATGCTCAAATATATGATACCAATGCTAAAGAGCTCAAGCACATGAATCCTCTTCCACAAAATTTTCTTGAGTCACTTGATGGAAAACATGATTTCTTGGGACCAGAAATTCCTCCATCAATAGTCTCTGCAATAGCTGAAGGATACTTGAATCCATCAACCAAGAAAGCCTTTGATGAGTCTGAATATTCTAGATTTCCTCTACAGCCCATTGATCTCCAAAGCATTGATCAAGTCCAAAAAGCTGAAGTTCCTGACCATCTAGACAGGGGAATAGCTTTTCAATCATTGCCTCCCAATACACCAGAGAAAATAGTACAGGCAATGACAAGGCTCTCAGATGATATTCACCAAAAAAAAAAAAGGCTCTCAGATGAAGATAAGTATTCCAATGAAGCATTGTCACTTCAGAAACTAATCAAGCCATTGGTAAAAAATGGAACAGAAGAGAAGACCATTATATCTGATAACACTCCTTTGAAGGTTCCTGACAACAATCCATTCAGGATAAGAAAAAGTGAGGGAACATATCAGACAAAGGACACTGTAGAAAAAGTTTCTGTTGCCAGCAGCATGGAATATACTGACTTATTATGCATGTCTCCAGATAACTTTCAAGAGATGTACGATGAGAATCTTTCAAGGAAAAGGAAATTTCTGAACATTTGTTCAGATGAAGTTGAAGCCACTGATGAACTGGTTTCAGGAGTGACTGAAGTAGAAAAACCTGATATTCTATGCATGGCTGTGGAATCCCCAGAAAGTATAAATTCTGATCACACTAAGAAAATTGCTGATTTGAAAGGAAGAAGTGAAAGTAATAAGAAATCCAAGAGAAGCAACAGCAGGAAAACGGGGGGTAACAACATGACTCTTTTGAATTTCTTTTCAAGAGTGTAA 1902 0.3933 MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSNSERKLRYIEYFMHRVNLLRFYKITPVVVFDGGNVPCKAATEEERNRHVFCESRFSVHDLIVLGKEGLIVNWQCLSSKKGMLVQLQSSSSSRIFFSFFCVQRAVNITPVMAHKLIQTLKSENIEFVVAPYEADAQLAYLSHLEVKNGGVAAVITEDSDLIAYGCPAFHRSPAFWIVIRSGFEQIIFKMDRHGNGERIELEKVFSAESGRPSFRSFNMKLFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKIEKGDQVPEDYAKSFQEAIAVFEHAQIYDTNAKELKHMNPLPQNFLESLDGKHDFLGPEIPPSIVSAIAEGYLNPSTKKAFDESEYSRFPLQPIDLQSIDQVQKAEVPDHLDRGIAFQSLPPNTPEKIVQAMTRLSDDIHQKKKRLSDEDKYSNEALSLQKLIKPLVKNGTEEKTIISDNTPLKVPDNNPFRIRKSEGTYQTKDTVEKVSVASSMEYTDLLCMSPDNFQEMYDENLSRKRKFLNICSDEVEATDELVSGVTEVEKPDILCMAVESPESINSDHTKKIADLKGRSESNKKSKRSNSRKTGGNNMTLLNFFSRV 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0267 633 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aed7g0267 633 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 168 185 IPR006084 -
Aed7g0267 633 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Aed7g0267 633 ProSitePatterns XPG protein signature 2. 172 186 IPR019974 GO:0016788
Aed7g0267 633 Gene3D - 1 257 - -
Aed7g0267 633 MobiDBLite consensus disorder prediction 591 624 - -
Aed7g0267 633 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 265 394 IPR036279 -
Aed7g0267 633 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 97 IPR006084 -
Aed7g0267 633 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 150 628 IPR006084 -
Aed7g0267 633 SMART xpgn3 1 102 IPR006085 GO:0004518
Aed7g0267 633 MobiDBLite consensus disorder prediction 591 613 - -
Aed7g0267 633 Pfam XPG N-terminal domain 1 96 IPR006085 GO:0004518
Aed7g0267 633 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 97 - -
Aed7g0267 633 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 150 628 - -
Aed7g0267 633 CDD H3TH_FEN1-like 270 340 - -
Aed7g0267 633 SMART xpgineu 169 249 IPR006086 GO:0004518
Aed7g0267 633 SMART HhH_4 267 300 IPR008918 GO:0003677|GO:0003824
Aed7g0267 633 Pfam XPG I-region 172 280 IPR006086 GO:0004518
Aed7g0267 633 Gene3D - 263 336 - -
Aed7g0267 633 SUPERFAMILY PIN domain-like 2 280 IPR029060 -
Aed7g0267 633 CDD PIN_EXO1 1 253 IPR044752 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0267 Aed-Chr7 1887641 1891330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0267 151 366 Core DNA Replication Machinery Family AT5G26680 25.346 4.35e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0267 K10746 - gmx:100817932 905.975