Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0244 ATGCCTGTGGTGACAGAAGACATGAAATGGAGAAGACCAAGAAACCAATTGAGGCACCCCATTTCAGAAACCGATGATCCAAACCCTCAAATCCAATCCTCTCACAGCAAATCCACCATCTCCTCTCTCTTATCTTCTTTCTCCAACTCCAACGAAACCGCACATGCCGGAGACCAAAACAGAAACACCACCACCAACAACAAAAGCAACAGAAAATTCTCAGCTGCAACCTTCAGAGGGTTCGGGTGCACTGCCAGTGCATCGCAGAAGGTGTCGGTGCCAGTGCCGGCGGTGATTCGGTCCTCGGCGGATTGGGAAGGGAAGAGGACCAGAAAGAAGAAGCACAGAATAAGGAACGGTAACAGTAACAGTGGCAACACATGTGATGATGATGATGTTTCTAGTGTGGATTTTCAGGATGTTTGGTGTGGCCCTGGAATTGGGTTATCAAATACTGATTCTGCTGCATCTGTGGAATGTGTTGTGGCGAGGAACAATGTGGTGGAGAGGGTAACACACAGGGAGCAGCGTTCATCTTATTTTGGAAGGCGCACTGTAAAGCCAGAAAGCTTCTCCTTTGTGGATGATGATGAACCTGACATTTTCACAGCACGCCCTGGATTAGATCAGCCTTTTCGCACTGCTAGATTCTATCGCCATGCTCCACATCCTTCCCCTGATGGCCTTGCTCAGATAATGATAATTCAAGGAAGAATACTAATGGGGGGACGATTTAACTCACACGACCAATTTAGAGACTGGCGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAACTGGGGGAGAGAATCGGTCATGTCAACACTGGGCTCAAAGAAGATGAGATGGGACTCAACATAAGGAAAGTTAAGCTTTCAAGTTCAAATGATACATCAAAACAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGGAGGAGTATGAATCTGATGATGAGGTGGGGAGATTGAAGTGTGAACACAGTTATCATTTTCAGTGTATAAAACAATGGCTTTTGCATAAAAACTTCTGCCCAGTTTGTAAGGAAGAAGTTGTGGTTCGACACTAG 1077 0.455 MPVVTEDMKWRRPRNQLRHPISETDDPNPQIQSSHSKSTISSLLSSFSNSNETAHAGDQNRNTTTNNKSNRKFSAATFRGFGCTASASQKVSVPVPAVIRSSADWEGKRTRKKKHRIRNGNSNSGNTCDDDDVSSVDFQDVWCGPGIGLSNTDSAASVECVVARNNVVERVTHREQRSSYFGRRTVKPESFSFVDDDEPDIFTARPGLDQPFRTARFYRHAPHPSPDGLAQIMIIQGRILMGGRFNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGLNIRKVKLSSSNDTSKQHQLDKKCSVCQEEYESDDEVGRLKCEHSYHFQCIKQWLLHKNFCPVCKEEVVVRH 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0244 358 Pfam Ring finger domain 309 351 IPR001841 -
Aed7g0244 358 SUPERFAMILY RING/U-box 309 356 - -
Aed7g0244 358 MobiDBLite consensus disorder prediction 22 70 - -
Aed7g0244 358 ProSiteProfiles Zinc finger RING-type profile. 310 351 IPR001841 -
Aed7g0244 358 MobiDBLite consensus disorder prediction 7 21 - -
Aed7g0244 358 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 3 358 - -
Aed7g0244 358 SMART ring_2 310 350 IPR001841 -
Aed7g0244 358 MobiDBLite consensus disorder prediction 103 130 - -
Aed7g0244 358 MobiDBLite consensus disorder prediction 1 70 - -
Aed7g0244 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 356 IPR013083 -
Aed7g0244 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 358 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0244 Aed-Chr7 1705114 1710300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0244 4 264 C3H Transcription Factor Family AT1G73760 37.931 6.23e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0244 - - gmx:100807785 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0244 7 1705114 1710300 Aed5g2615 5 26862114 26866229 ECH
Aed7g0244 7 1705114 1710300 Aed7g0244 7 1705114 1710300 ECH