Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed7g0158 | ATGGAATCAGCTGGGAACTCTTCTCCAACGACCAATCCTGAATCCCCAAACCCAAACTCTTCTTCTGCTGATTTTAACACGGAGCAGCTTCCTCCCACCCACACCAGCCATGCTTCCGAAGACAACGAAGCTTCCATTGATCACAATATCATACAAGACGACGATCAACCTGCAGAAGAAGAAGAATATGGAGAGGATCTTTATAACGATAACTATATGGATGATTACAAGGAGATGGAGGACGCTGACCACTTCGAATCGTTTGGTCTCGACGACTCGTTGGAGGATGACGGGGATTATGATCAGATCATGCAGGGTCGAAGGGCTGCAGAAACTGAACTGGACGCGGGCCATGGACGCAGAAAACTTTCCCAGCTTCTCCTTGATCAGGTGACGTTCTTGGTGTGGAAAACAAATGGTGTTATGGTGTTGATCACCGAAGTTTCTATTGCAGATATAGATGATGACCGTGACAGGCCTTCTAAAAGGGGTCGGGGTCTTGGTCCTGTATCAAGTGATGGTGATCTTGATGGGATGCAATGTTCACCTGGAAGGCATGATGCTCCTATGACTTATGAAACTGAGAATGATCAAGATGATGATTGCGAACCTTCTTCTAATAATAATGATGATGAAGATGAAGCTAGGCATATGCATGCTATTCAAGGAACACTTAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCAAGGAAATTCAATCACTTCTTACTCACATATGTTAATCCAAGAAGAGAACATCGAGGCAAGGAATATGTGTGGCTGATAAATGATATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCCATGTTCATCCCTACATTGCTGTTTGGCTGGCTGATGCGCCTCAGCCTGTCTTAGAAGTAATGGAAGATGTTACCAAAAGTGTTGTCTTTGAATTACATCCAAATTACAGAAATGTACACCAAAAGATTTATGTACGAATAGCCAACTTGCCAGTTTATGACCAGATTCGAAATTTAAGTAGGGAGAAATACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAACAGGTGAAGTATGACTGTAGTAAATGTGGAGCAATTTTGGGTCCTTTTTTTCAGAATTCCTATTTAGAGGTGAAAGTGGGATCATGTCCCGAGTGTCAAGCAAAAGGACCATTCACTGTCAATACTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACCCTCCAAGAGAGCCCAGGAATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATTGACTGTGCTCGCCCTGGAGAAGAAATTGAGGTCACAGGTGTTTATACCAATAATTTTGATTTATCCCTAAACACGAAAAATGGGTTTCCAGTTTTTGCCACCGTTGTTGAAGCAAATTATGTTACCAAAAAGCAAGACCTTTTCTCTGCCTACAAACTTACGCAGGAAGACAGGGAAGAGATTGAAAATTTGGCGAAAGACCCTCGAATTGGAGAAAGGATTGTCAAGTCTATTGCTCCATCAATCTATGGTCATGATGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAGAAAAATGTAGAAGGAAAGCATCGCATGCGAGGAGACATAAATGTTCTTCTCCTGGGTGATCCAGGGACAGCGAAATCTCAGTTTCTTAAATATGTTGAAAAAACTGGACAGAGAGCTGTATACACCACTGGTAAAGGGGCTTCTGCAGTGGGTCTCACAGCTGCCCTTCATAAGGACCCAGTCACAAGGGAATGGACTCTTGAAGGAGGAGCATTTGTTCTGGCTGACAAAGGAATTTGTCTTGTTGATGAGTTTGACAAGATGAAAGACCAGGATAGGGTGAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCGGTTATTGCTGCCGCAAATCCCGTTGGAGGAAGATATGATTCCTCTAAAACATTTTCTCAAAATGTTGAATTGACAGATCCGATTATTTCCCGTTTTGACATCCTCTGTGTTGTGAAGGACGTTGTTGACCCGGTCACCGATGAAATGCTAGCAACGTTTGTCACTGATAGTCACTTCAAGTCACAACCCAAGGGTGCTAATCAAGATGACAAGTCCTTTAGTGAGTCCCAAGATGTGAATGCTTCTGCCATGCCAGCTGATCCAGAGATACTTTCTCAAGATCTCCTGAGGAAGTACATTACATATGCCAAGTTGAATATTTTTCCCAAGTTATTGGATGTCGATAAGTACGATGAAAAAATAAAAAACTTCTATGCCGATCTGCGCAGGAAATCTTCACAAGGACAATGTGTCCCTATTGCCGTAAGGCACATTGAATCAGTGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTGAGACAAGTTGTTAGAGAAGACGATGTAGACATGGCAATTCGTGTTCTACTTGAATCATTCATTTCAACACAAAAATTTGGGGTGCAGAAAGCTCTTCAAAAGAGCTTTATAAAGTACATGACTTTCAAGAAGGACTATAATGATGTTCTCCTTTTCATTCTCCGCAAGCTTGCACAGAATGCTTTGCATTTCGAAGAAGTTGTCACCGGATCTGTTGAAGGTCTAACTTATGTAGATGTCAAAGTAGATGATCTCTATAAAAAGGTAATTACATTTGTCCATTGTGTGTTTCCAACCGAGATAATCAGTGACTTGACTATCGAATTTGTTTGA | 2829 | 0.4182 | MESAGNSSPTTNPESPNPNSSSADFNTEQLPPTHTSHASEDNEASIDHNIIQDDDQPAEEEEYGEDLYNDNYMDDYKEMEDADHFESFGLDDSLEDDGDYDQIMQGRRAAETELDAGHGRRKLSQLLLDQVTFLVWKTNGVMVLITEVSIADIDDDRDRPSKRGRGLGPVSSDGDLDGMQCSPGRHDAPMTYETENDQDDDCEPSSNNNDDEDEARHMHAIQGTLREWVTRDEVRRFIARKFNHFLLTYVNPRREHRGKEYVWLINDMVSASKCSLEIDYKQFIHVHPYIAVWLADAPQPVLEVMEDVTKSVVFELHPNYRNVHQKIYVRIANLPVYDQIRNLSREKYLNTMIRIGGVVTRRSGVFPQLQQVKYDCSKCGAILGPFFQNSYLEVKVGSCPECQAKGPFTVNTEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDREEIENLAKDPRIGERIVKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRMRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAALHKDPVTREWTLEGGAFVLADKGICLVDEFDKMKDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLATFVTDSHFKSQPKGANQDDKSFSESQDVNASAMPADPEILSQDLLRKYITYAKLNIFPKLLDVDKYDEKIKNFYADLRRKSSQGQCVPIAVRHIESVIRMSEAHARMHLRQVVREDDVDMAIRVLLESFISTQKFGVQKALQKSFIKYMTFKKDYNDVLLFILRKLAQNALHFEEVVTGSVEGLTYVDVKVDDLYKKVITFVHCVFPTEIISDLTIEFV | 942 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed7g0158 | 942 | Pfam | MCM AAA-lid domain | 766 | 852 | IPR041562 | - | |
| Aed7g0158 | 942 | Gene3D | - | 232 | 336 | - | - | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 700 | 708 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 621 | 635 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 649 | 662 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 561 | 576 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 673 | 685 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed7g0158 | 942 | MobiDBLite | consensus disorder prediction | 194 | 208 | - | - | |
| Aed7g0158 | 942 | Gene3D | - | 368 | 418 | - | - | |
| Aed7g0158 | 942 | Gene3D | - | 341 | 466 | IPR012340 | - | |
| Aed7g0158 | 942 | ProSiteProfiles | MCM family domain profile. | 520 | 726 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed7g0158 | 942 | PANTHER | DNA HELICASE | 165 | 921 | - | - | |
| Aed7g0158 | 942 | Pfam | MCM OB domain | 340 | 467 | IPR033762 | - | |
| Aed7g0158 | 942 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 165 | 921 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed7g0158 | 942 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 530 | 853 | IPR027417 | - | |
| Aed7g0158 | 942 | Pfam | MCM N-terminal domain | 240 | 333 | IPR027925 | - | |
| Aed7g0158 | 942 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Aed7g0158 | 942 | CDD | MCM2 | 523 | 851 | - | - | |
| Aed7g0158 | 942 | ProSitePatterns | MCM family signature. | 629 | 637 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Aed7g0158 | 942 | MobiDBLite | consensus disorder prediction | 733 | 753 | - | - | |
| Aed7g0158 | 942 | Gene3D | - | 500 | 875 | IPR027417 | - | |
| Aed7g0158 | 942 | MobiDBLite | consensus disorder prediction | 155 | 214 | - | - | |
| Aed7g0158 | 942 | SUPERFAMILY | Nucleic acid-binding proteins | 242 | 489 | IPR012340 | - | |
| Aed7g0158 | 942 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Aed7g0158 | 942 | Pfam | MCM P-loop domain | 508 | 730 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed7g0158 | 942 | Pfam | Mini-chromosome maintenance protein 2 | 41 | 116 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 350 | 367 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 408 | 422 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 484 | 495 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 469 | 480 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed7g0158 | 942 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 373 | 385 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed7g0158 | 942 | SMART | mcm | 336 | 853 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed7g0158 | Aed-Chr7 | 1083490 | 1087882 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed7g0158 | 25 | 920 | Core DNA Replication Machinery Family | AT1G44900 | 68.317 | 0.0 | 1210 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed7g0158 | K02540 | - | gmx:100813006 | 1422.14 |