Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g0042 ATGATGCTCGGAGAGCGCCATCGCGCGAATCCAACGGTCCACGTGCCACCGTGGCCAACCCACGACGATCCAACGGCCGAGATGTACTCAGCGTTTTTAACGAACGACGTCAATGCTGGTGAGTACTCTCCATACTGTTTCCAAGAAGCACTAACGGCGCTGCAGCGTTACCTGCCGTCAAACGAAACGGATGCTGACTCGGACTCGGAGGCTCAAACCGGCGCGCCGGTGGACGCGTACTCGTGTGACCATTTCCGCATGTACGAGTTCAAGGTCCGTCGATGCGCACGTGGCAGGTCACACGACTGGACTGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGCCGAGACCCCCGGAAGTTCCACTATTCTGGCGCGGCTTGCCCGGAGTTTCGCAAGGGAAACTGCAAGAAAGGTGATTCGTGCGAGTTCGCGCACGGCGTTTTCGAGTGTTGGCTTCACCCGGCGCGCTACCGGACTCAGCCGTGCAAGGACGGCACGAGTTGCAGGCGGCGCGTGTGCTTCTTCGCACACACGCCGGAACAGCTGCGCCTCTTGCCGATGCAGAGTCCGCGTAGCGCGGCGGAGTCCTATGACGGGTCTCCGATGAGGCAGGTTTCTATGTCCCCGGCGGCGTTCATGTCATCTCCGGCGGCTTCTCTCTCTCCGCCGGAGTCTCCGCCGGTGTCACCGTCGATCAACGAGATGGTGGCCTCTCTGCGTAATTTGCAGCTTGGAAAGATGAAATCGATGCCTCATAATAGAAACGTATCGGTGGGGTCGCCGAGAGGATCCGTGCTCCGACCCGGGTTTTGTAGTCTTCCAACAACGCCAACACAGCAACCGGTTCGGTCTGGGGTGAATTATTTTGATGTTTGGGAGCAGAGTTGTGAGGAGGAACCGGTTATGGAAAGGGTGGAGTCTGGGAGGGGAATTAGGGCTAAGATGTTTGAGAAGCTTAGCAAGGAGAATTCGCTGGAGGGTTCGGGTTCGGGTTCGGGTCAAGGAAGCGGGGCTCCGGATCTTGGGTGGGTTTCGGAACTGGTGAAGTGA 1059 0.5873 MMLGERHRANPTVHVPPWPTHDDPTAEMYSAFLTNDVNAGEYSPYCFQEALTALQRYLPSNETDADSDSEAQTGAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLLPMQSPRSAAESYDGSPMRQVSMSPAAFMSSPAASLSPPESPPVSPSINEMVASLRNLQLGKMKSMPHNRNVSVGSPRGSVLRPGFCSLPTTPTQQPVRSGVNYFDVWEQSCEEEPVMERVESGRGIRAKMFEKLSKENSLEGSGSGSGQGSGAPDLGWVSELVK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g0042 352 Gene3D - 122 193 - -
Aed7g0042 352 PANTHER UNKEMPT FAMILY MEMBER 7 352 IPR045234 -
Aed7g0042 352 MobiDBLite consensus disorder prediction 1 20 - -
Aed7g0042 352 MobiDBLite consensus disorder prediction 324 352 - -
Aed7g0042 352 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Aed7g0042 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Aed7g0042 352 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Aed7g0042 352 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Aed7g0042 352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g0042 Aed-Chr7 240812 241870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g0042 80 318 C2H2 Transcription Factor Family AT5G12850 46.748 1.12e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed7g0042 zf-CCCH 3.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g0042 - - gmx:100778184 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0042 7 240812 241870 Aed7g0042 7 240812 241870 ECH