Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2612 ATGGCATTTACTACTGCTTCAACTCACAAATCGGGCGGAATTCAAATTCATGCAGGGGCAACCAATGATGATATATACAAGGAATTGTGGCATGCATGTGCTGGTCCCCTTGTCACTCTCCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAGCAGCTTGAGGCATCTATGTATGAGGGATTAGAGCAGCAGATGCCTTCCTTCAACCTGCCTTCTAAAATATTATGTAAAGTGGTCTATGTTCATCTTCGAGCTGAACCCGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACCAGCCCTGATGATCCGCTGCCTGAATCTCCGAGGGTCAAGATCCATTCATTTTACAAGACACTTACTGCTTCAGACACCAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCAGACGATTGTCTGCCTCCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTACACGGGAATGAATGGCATTTTAGACATATTTTTCGAGAGTTTATTGTGTGTGTCAACAAGTATCTGGAAGCTCAGAGTCATAAACTCTCTGTTGGGATGAGATTCAAAATGCGATTTGAAGGTGATGAAATTCCCGAAAGAAGGTTTAGTGGCACAATTGTGGGTGTTGGAGATAGCAAATCATCGGTCTGGCCCAACTCTGAGTGGCGATCATTAAAGGCAAGTATACAAAATGTCTTGTGTGATTTTAAAGTGCAATGGGATGAACTGTCCTCAATTTTGCGTCCTGATAGAGTTTCATCATGGGAATTGGAGCCACTTGTGGCTACCACTCCTGCAAACTCGCAGCCAACCCAAAGAAACAAGAGGGCACGGCCTCTCATTCTACCTTCTACAATGCCCGATTCTTCATTGCAAGGCATGTGGAAATCATCAGTTGAATCTACATCTTTCTCTTATTGTGACCCCCATCGTGGACGTGGTTTCTATCCATCACCCAAGTTCAATTCTTCTGCAACTAACTTTCTTGGTTTTAGTGGGAATAGCTCTGTGGGACCTCCTACCAATAAATCAATATATTGGTCTAATAGGATGGAAAATAACTTGGAATCTAATTCAGCTATAGGCCTTAAAGAAGCTGGAGAGAAGAGACAAGGCAGTGGAAATGGCTGTAGACTCTTTGGGATTCAACTACTTGAGAACTCTAACGCAGATGGAAGTCTACAAACAGTCACTTTGTCGGGAAGGGTGGGTGATGATAGGTATGTTCCATCTTTAGATGCCGAGTCTGATCAGCATTCTGAACCATCAAATGCCAATCGATCTGATATTCCTTCAGTAAGTTGCGATGCTGAAAAATCATGCCTGCAGTCTCCCCAGGAGTCACAAAGCAAGCAAATAAGGAGCTGTACAAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTCGGGAAATTGGAAGAGATGTTTGACATCAAGGCTGAGCTCTGTGGGTCCCTAAAGAAATGGCAGGTGTTCTACACTGATAATGAAGATGACATGATGATGGTTGGAGATGATCCGTGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTATACGGCAGAGGAGGTGAAGAAGCTTTCGGCGAAAATAGGAGTTGCAATGAATGAAAAAGTAAACCCAAGGAAGCAGCTGGATTCGGAAGCAATAGTGAATAATCCTGAGGACCAGTCATCTAATATGGGGCCCAGTTGCTAG 1809 0.4411 MAFTTASTHKSGGIQIHAGATNDDIYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMYEGLEQQMPSFNLPSKILCKVVYVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPESPRVKIHSFYKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFREFIVCVNKYLEAQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDSKSSVWPNSEWRSLKASIQNVLCDFKVQWDELSSILRPDRVSSWELEPLVATTPANSQPTQRNKRARPLILPSTMPDSSLQGMWKSSVESTSFSYCDPHRGRGFYPSPKFNSSATNFLGFSGNSSVGPPTNKSIYWSNRMENNLESNSAIGLKEAGEKRQGSGNGCRLFGIQLLENSNADGSLQTVTLSGRVGDDRYVPSLDAESDQHSEPSNANRSDIPSVSCDAEKSCLQSPQESQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLGKLEEMFDIKAELCGSLKKWQVFYTDNEDDMMMVGDDPWDEFCSVVRKIFIYTAEEVKKLSAKIGVAMNEKVNPRKQLDSEAIVNNPEDQSSNMGPSC 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2612 602 MobiDBLite consensus disorder prediction 438 454 - -
Aed6g2612 602 Pfam AUX/IAA family 469 513 IPR033389 -
Aed6g2612 602 Pfam AUX/IAA family 523 564 IPR033389 -
Aed6g2612 602 SUPERFAMILY DNA-binding pseudobarrel domain 126 188 IPR015300 -
Aed6g2612 602 Pfam Auxin response factor 187 248 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed6g2612 602 PANTHER AUXIN RESPONSE FACTOR 1 22 187 - -
Aed6g2612 602 MobiDBLite consensus disorder prediction 430 454 - -
Aed6g2612 602 Gene3D - 471 565 - -
Aed6g2612 602 PANTHER AUXIN RESPONSE FACTOR 1 188 562 - -
Aed6g2612 602 MobiDBLite consensus disorder prediction 581 602 - -
Aed6g2612 602 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 188 562 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed6g2612 602 SMART B3_2 130 228 IPR003340 GO:0003677
Aed6g2612 602 ProSiteProfiles PB1 domain profile. 476 568 IPR000270 GO:0005515
Aed6g2612 602 Gene3D - 207 286 - -
Aed6g2612 602 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 187 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed6g2612 602 CDD B3_DNA 128 218 IPR003340 GO:0003677
Aed6g2612 602 MobiDBLite consensus disorder prediction 583 602 - -
Aed6g2612 602 SUPERFAMILY CAD & PB1 domains 478 553 - -
Aed6g2612 602 Gene3D - 121 206 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2612 Aed-Chr6 27037793 27046306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2612 188 601 B3 DNA Binding Superfamily AT1G59750 57.554 1.69e-138 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2612 K14486 - gmx:100815450 733.406