Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2605 ATGTCTGAAATGCGGGTATCTGAGCTTCACTTGAAGAAGGAACTCACCCAAATCCGCAAGGCTGCTCGAGTACTCAGAGATCCTGGCACAACTTCTTCTTGGAAGTCACCACTCAGTTCATCGAGATCTGTGGCTGCATGGAACAAAGACGCTGCCACTGCGAGTAGAAGGTTCACTGCTACTTCTCAACTTCCCAACACCAATGACAAGGACAAGAGGGTGTTCTTGTACAATTGGAAGAACTACAAATCTTCGAGTGAGAAATACAACGAGGAGGAAGAAGATGAAGATGACGATGATGGTGGTGGATCTTCTTCGCTTCTTGGGGACAGAGACATAGATAGTTTGAGTGATGCTCGCAATGGTTGTGACTCTAAGAGTGATACTTACTTGGCTGCTGCCACTGGTTCCACTCGTTCTTCCATTTTCCGATGTGGGGATGCCAATCGAACGGTTCCCCTTAAGAAAAAGAGTAAGAAAAAGAACCCTCATTTTGATTTTTTAGCAAAGTATGAAAAACAACATCATGGACCAGGAAGAAATTTTGTGAGTTCCTCGAAGGCAGCATTGCTTTCAGAGGGGCGGCATCCTATGCCTTTTTTTAGCAGAGACGACTCGGTTGAGCTCTCTGATGATACCGCCAATTCTGAGGGCGTGAGTGTGAGACCAATCACTGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAACAATTGGTTGAGAAGAAGCCGCTGCCGGAAAGAGGATTCTTCTTATTCTTATAGCACTCCTGCATTGTCAACTAGTTCTTACAATAGGTATGGTGGCCACCGCTATCCCAGCACTCTTGGATCATGGGATGGAACCACCACCTCGATCAATGACAATGATGGCGACGATGAGATTGATGATCATTTGGATTTGCCCGGGCGTCAAGGGTGTGGAATTCCTTGCTACTGGTCCAAGAGGACGCCTAAACATAGAGGGATGTGTGGGAGTTGTTATTCTCCCTCACTCTCCGATACACTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAGAGACACCGCAGATCAGCTTCTGCTTCTCACAAGCGGAGACTCTCTCTGAGGAGTGCTCGAGGTGTTATTCCATTGCTCACTAACAGTGGTGATGTTAGGGAAGCCTCATCTGTGGGAACTGGTAGGAGTGATGACGATCTTTCCACTAACTTTGGGGAGCTTGATCTCGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCCAGCTGTAGGAGTCAAGAGGGATTGGAGATAGTAGCTCTCAATGGGGAAGGGGAAGATGAGGGCACGCCGGAGAATAATCACAGTTTCAGCCAGAAGTATACACCCATGTTCTTTGGTGAACTGATAGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCAAGGGGCCGCATTGCTCCTGTTTATCTGTTTCAAGGTCCCCGTGGTACTGGCAAAACATCAACGGCTAGGATATTTGCTGCTGCCTTGAATTGTGCAAGTCCTGATGAGACTAAACCTTGTGGCTACTGCAGGGAATGTGTTGATTTCATTTCTGGTAAGACCAGTGATCTATTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTACTAAAACGACTGTCAACTGCTTCATCATCAGCTTCCCCACAATATACAATTTTTGTTATTGATGAGTGTCACCTCTTGCCCTCCAAGACATGGCTTGGATTTCTTAAGTTTCTGGAAGAACCACCGCAGCGAGTTGTATTCATATTTATAACATCTGATCCTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTCACCAGGTTGAGGAAAATATCTACTCAAGAGAACCTTGATGTTGAAGCAGATGCACTAGACCTCATTGCTATAAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTGTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCATCGGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCGGGTCTTATCATGGACATCATTGCTGGATCATATGCAGTCATTGACACCAAACCTGATGATTCAATCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGACAGATTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCGACATGGTTCACAGCAACTCTATTGCAGCTTGGTTCTACACCTTCTCCTGATCTTACTCAGTCAAGCAGCAGTAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGACATTACCTCTTGCACGCCAAAGTCAGATCCTCAATATGTGCCTCGAAAGTCAGCATACACTGCATCCCAACAAAAAGCCATAAATGATAATTCCCACCATCAAAAGGATATATCCTCAAAGATTGAAGGTTTCAGCTTGAAATCAAAGCCATCAAACAGCCCAGTCATAGATGATGGCTCCACAGTGGTCTCATCTGATGATCTTATGGTTGGGAATACAATGTATAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATCGAGAGGTGTCACTCTAAGACATTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCCGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGGAGATGCAGATATTAAAGTTAGGGTTGAGAGGTTTTTAAGAAGCATTACAAACTCCATAGAAATGGTTCTTAGGCGCAATGTGGAGGTCAGAATAATCCATTTGTCAGATGGTGAAGGTGAAAATCAAGTTAATCTAGTAGGCCTGAAGCAGGTAAAGTCAACAGTGGGTGGTGAGAAGGAACAAAGAAAGGGTCATATGAATGGAACAGAGTCTTATTCTAGTTTGCCTCCTCTATTGGATGGCACTGCTTCATCCGATATTTTGGCTGAAGGAAATGGTGTGAGGGAGAGAAGGCAGGATAATCCAATGCAAAGAATTGAATCCATCATTCGTGAACAGAGGCTGGAAACTGCTTGGTTACAGGCAGTAGAAAAGGGTTCTCCTGGATCACTGAGTCGGTTGAGACCTGAGAAGAATCAAGTCCTGCCACAGAATGGTGTGGACCCAATGGAGTCCATGGATTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGATGACCCGAATAATGAACTCAAAGTTTTAACCCTTAAAAATGGAAGGGTCCCACAGAAGGATCAGATTGGTAGAAAGGCAGATCGTTATCCCATGTCACCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATATGGGATATGAATCAGGGTCGGGAGCTGGTGGTTGTGGATTTTTATGTTGGAATAAGTCCAAGCCTAGAAGGGCATTAAAGGTAAAAGGTGGCACCCCAGTTGGAGCGCGTAGAGCTGCAACCTTTACATTGTTTGGTGACTGCAAACCAAAGAAAAGGGAGCGGAGAAGATAA 3675 0.443 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNKDAATASRRFTATSQLPNTNDKDKRVFLYNWKNYKSSSEKYNEEEEDEDDDDGGGSSSLLGDRDIDSLSDARNGCDSKSDTYLAAATGSTRSSIFRCGDANRTVPLKKKSKKKNPHFDFLAKYEKQHHGPGRNFVSSSKAALLSEGRHPMPFFSRDDSVELSDDTANSEGVSVRPITGTSPLLLKLRQNNWLRRSRCRKEDSSYSYSTPALSTSSYNRYGGHRYPSTLGSWDGTTTSINDNDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSMLCGSQRHRRSASASHKRRLSLRSARGVIPLLTNSGDVREASSVGTGRSDDDLSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENNHSFSQKYTPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDETKPCGYCRECVDFISGKTSDLLEVDGTNKRGIDKARYLLKRLSTASSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDPDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAINADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSIFGGRSLNESELDRLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDITSCTPKSDPQYVPRKSAYTASQQKAINDNSHHQKDISSKIEGFSLKSKPSNSPVIDDGSTVVSSDDLMVGNTMYRCIDSGKLCDIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFGDADIKVRVERFLRSITNSIEMVLRRNVEVRIIHLSDGEGENQVNLVGLKQVKSTVGGEKEQRKGHMNGTESYSSLPPLLDGTASSDILAEGNGVRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPMESMDSTRFSSHQHWEDDPNNELKVLTLKNGRVPQKDQIGRKADRYPMSPSLLHDNSLATISGKDNMGYESGSGAGGCGFLCWNKSKPRRALKVKGGTPVGARRAATFTLFGDCKPKKRERRR 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2605 1224 MobiDBLite consensus disorder prediction 822 854 - -
Aed6g2605 1224 MobiDBLite consensus disorder prediction 1006 1030 - -
Aed6g2605 1224 CDD AAA 459 617 - -
Aed6g2605 1224 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 445 794 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Aed6g2605 1224 SUPERFAMILY post-AAA+ oligomerization domain-like 691 792 IPR008921 GO:0003677|GO:0006260
Aed6g2605 1224 Coils Coil 756 783 - -
Aed6g2605 1224 MobiDBLite consensus disorder prediction 797 811 - -
Aed6g2605 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 667 IPR027417 -
Aed6g2605 1224 SMART AAA_5 477 627 IPR003593 -
Aed6g2605 1224 MobiDBLite consensus disorder prediction 343 362 - -
Aed6g2605 1224 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 188 1164 - -
Aed6g2605 1224 Pfam DNA polymerase III subunits gamma and tau domain III 674 740 IPR022754 GO:0003887
Aed6g2605 1224 MobiDBLite consensus disorder prediction 86 111 - -
Aed6g2605 1224 Pfam DNA polymerase III, delta subunit 460 620 - -
Aed6g2605 1224 MobiDBLite consensus disorder prediction 26 46 - -
Aed6g2605 1224 MobiDBLite consensus disorder prediction 29 46 - -
Aed6g2605 1224 Gene3D - 437 618 IPR027417 -
Aed6g2605 1224 PANTHER PROTEIN STICHEL-LIKE 1 188 1164 - -
Aed6g2605 1224 CDD HLD_clamp_pol_III_gamma_tau 620 683 IPR045085 -
Aed6g2605 1224 MobiDBLite consensus disorder prediction 797 862 - -
Aed6g2605 1224 Gene3D - 622 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2605 Aed-Chr6 26966244 26972759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2605 441 735 Core DNA Replication Machinery Family AT1G21690 23.684 3.11e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2605 - - gmx:100814391 2063.89