Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2580 ATGAAACGCCCAAACGACGACACCGCCGCCCCCTCGACCGGGAAGCCAGTGTTCCTAACCAAAGTCCAGCGCGAGCAATTGGCCCTCCAACGCCGCCAGGATGAAGTTGCCGAGCAGAAGCGCCGCCAGGAGCAGCTCCTCTCCCGCAACCACCCCTCCGATCCCAAACCCTCCTCCGACCGCGACAGAGAAAGGGACAGGGACAGAGAGCGTGACCGTGATAGAGATAGAGACCGGGACCGTGACAGAGACAGAGACCGAGACCGTGACCGTGACAGAGAACGCGAGCGCGAGAGGGCACGGGATCGGGACCGCGAAGCCGAACGGCGCAACAGAGAGAGGGAGCGCGAAGAGGAGGCCCGGGTCCGCGAACGCGCCCGGGTTGAGAAACTGGCTGAGCGTGAGCGCGAGAAGGAGCTGGATTCCATCAAGGAGCAGTACCTGGGCTCGAAAAAGCCCAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAACACGGAGGACACCTCGCGCGACATGAACGCCCTTTACCAGAACCCCCACGAGGCCCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAACAGAAGAAGCTCGCCGCCAAGAACGAGAAGGACATGCGCGAGGAAATCCGGAAGAAGGACGGCCTCGAGGAGAAGCCCGAGGAGGCCGACGCCCAACGGCGCAAGGAGGCCGCCGCCGACCTCTACGACACCTTCGACATGCGCGTGGACCGGCACTGGAGCGAGAAGAAGCTGGAAGAGATGACCGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCTATGAGGAGCTGGGTTGAGAGCAAATTGACCAACGAGCTTCTCAAGGCCGTGGAGAAGGCTGGCTACAAAACCCCTTCTCCTATTCAGATGGCTGCCATTCCGCTCGGTCTGCAGCAGCGTGACGTCATTGGCATTGCCGAAACGGGTTCCGGTAAAACCGCTGCCTTTGTTCTTCCCATGCTTAGTTACATCACCAGGCTTCCTCCCATAAGTGAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCCCAGCAGATTGAGGACGAGACTGTTAAGTTTGCTCAGTATTTGGGCATCAAGGTGGTCTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGCTTCAAGATTAGGCAGGGCTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGCTTGGAGCGCCGATATGCTGTGCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGATCGTATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGCGTCCTTGATGCCATGCCTTCCAGCAATCTCAAACCAGAGAACGAGGATGAGGAGCTTGATGAGAAGAAGATTTATCGCACCACCTACATGTTCAGTGCCACCATGCCTCCCGCCGTTGAGAGGCTTGCCAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGGCAACTGAGTTGATCAGTCAGCACGTGATCATGATGAAGGACTCTGAGAAATTTTACAAGCTTCAGAGGTTGCTTGATGAGCTTAACGACAAGACTGCAATTGTGTTTGTTAACACCAAGAAGAATGCGGATAATGTTGCCAAGAATTTGGATAAGGAAGGGTATCGCGTCACTACTTTGCACGGAGGGAAGTCTCAGGAGCAGAGGGAGATTAGTCTTGAAGGGTTCAGGACCAAGAGATATAATGTTCTTGTTGCTACTGATGTTGCTGGACGAGGGATTGACATACCGGATGTGGCTCATGTCATCAACTATGACATGCCTGGGAATATTGAGATGTACACGCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACGTTCTTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAGCAGATGCTTATTCAAAGTAACAGTCCTGTTCCACCTGAACTGGCAAGGCATGAATCTTCAAAATTCAAGCCTGGAAGTATCCCAGACAGACCACCTAGACGAAATGATACTGTTTTTGCGCATTAG 2142 0.5458 MKRPNDDTAAPSTGKPVFLTKVQREQLALQRRQDEVAEQKRRQEQLLSRNHPSDPKPSSDRDRERDRDRERDRDRDRDRDRDRDRDRDRDRDRERERERARDRDREAERRNREREREEEARVRERARVEKLAEREREKELDSIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMREEIRKKDGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLTNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVIMMKDSEKFYKLQRLLDELNDKTAIVFVNTKKNADNVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHESSKFKPGSIPDRPPRRNDTVFAH 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2580 713 Coils Coil 97 134 - -
Aed6g2580 713 CDD SF2_C_DEAD 531 660 - -
Aed6g2580 713 Pfam DEAD/DEAH box helicase 318 508 IPR011545 GO:0003676|GO:0005524
Aed6g2580 713 SMART ultradead3 312 534 IPR014001 -
Aed6g2580 713 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 546 690 IPR001650 -
Aed6g2580 713 Coils Coil 211 231 - -
Aed6g2580 713 MobiDBLite consensus disorder prediction 680 713 - -
Aed6g2580 713 MobiDBLite consensus disorder prediction 1 156 - -
Aed6g2580 713 MobiDBLite consensus disorder prediction 206 239 - -
Aed6g2580 713 MobiDBLite consensus disorder prediction 688 713 - -
Aed6g2580 713 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 448 456 IPR000629 -
Aed6g2580 713 PANTHER - 81 706 - -
Aed6g2580 713 MobiDBLite consensus disorder prediction 27 152 - -
Aed6g2580 713 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 81 706 - -
Aed6g2580 713 Gene3D - 524 711 IPR027417 -
Aed6g2580 713 SMART helicmild6 570 651 IPR001650 -
Aed6g2580 713 Coils Coil 22 49 - -
Aed6g2580 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 672 IPR027417 -
Aed6g2580 713 CDD DEADc_DDX23 304 520 - -
Aed6g2580 713 Pfam Helicase conserved C-terminal domain 545 651 IPR001650 -
Aed6g2580 713 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 293 321 IPR014014 GO:0003724
Aed6g2580 713 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 519 IPR014001 -
Aed6g2580 713 Gene3D - 254 523 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2580 Aed-Chr6 26765855 26767996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2580 291 673 Eukaryotic Initiation Factors Gene Family AT3G19760 31.771 1.26e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2580 K12858 - gmx:100792810 1140.18