Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2574 ATGGATACTGGAGGCTTTCATGGCTACGGCAAGCTTCCCTCTGCAGGGTTGAAGCTGTCAGTGTCATCGTCGTCAGACATGAACATGAGGAAGCAGCAGGCAGGATCATCATCATCATCAGATCAGAACAACAAGCACATAGCAGAGGAGAACGAATGCACTGTGAGGGAGCAGGACCGTTTCATGCCAATCGCGAATGTGATAAGGATCATGCGCAAGATTCTCCCTCCACATGCTAAAATCTCCGATGATGCAAAGGAGACAATCCAAGAGTGCGTGTCGGAGTACATCAGCTTCATCACTGGGGAGGCGAACGAGCGTTGCCAGAGGGAGCAACGCAAGACCATAACCGCAGAGGACGTGCTTTGGGCCATGAGTAAGCTGGGATTCGACGACTACATCGAACCATTGACCATGTACCTTCACCGCTACCGTGAACTCGAGGGTGACCGCACCTCTATGAGGGGTGAACCACTCGGGAAGAGGACTGTGGAATATGCTACTGCTTTTGTTCCACAAGTACCCTTTCACCACAATGGTTATAACTTTGGTGCTGCCATGGGGACTTACGTCAGGGAAGCGCCACCAAATGCTGTCTCCTCTCATCACCACCATGGAATCTCCAATGCTGAACCAAATGCTCGCTCCATCTAA 654 0.5122 MDTGGFHGYGKLPSAGLKLSVSSSSDMNMRKQQAGSSSSSDQNNKHIAEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATAFVPQVPFHHNGYNFGAAMGTYVREAPPNAVSSHHHHGISNAEPNARSI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2574 217 MobiDBLite consensus disorder prediction 21 44 - -
Aed6g2574 217 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Aed6g2574 217 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Aed6g2574 217 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Aed6g2574 217 SUPERFAMILY Histone-fold 58 157 IPR009072 GO:0046982
Aed6g2574 217 MobiDBLite consensus disorder prediction 202 217 - -
Aed6g2574 217 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 3 161 - -
Aed6g2574 217 MobiDBLite consensus disorder prediction 196 217 - -
Aed6g2574 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 161 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aed6g2574 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 125 IPR003958 -
Aed6g2574 217 Gene3D Histone, subunit A 47 167 IPR009072 GO:0046982
Aed6g2574 217 ProSitePatterns NF-YB/HAP3 subunit signature. 92 108 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed6g2574 217 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2574 Aed-Chr6 26721311 26723339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2574 1 151 CCAAT-HAP3 Transcription Factor Family AT5G47670 71.711 2.94e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed6g2574 CBFD_NFYB_HMF 6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2574 K08065 - gmx:100194424 353.599