Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2554 ATGGTTTCTGCGGAGAAAGATTCACATTCCAATTCCAACTCCAATGAGAACAAAACTTATCGAGCCATCGGGAGGTCCATGCGAACCGTGCGCTCCAAAGTATTCCAACACGACCACGCCACGTGCGTCTCCGACAGCTTAACCGGTTCACTAATGGAACTCGCCTCACGAAACAACAAGTCCGTTACGGAGGAGCAACTCCTCGAGCTCTCTCAAACTTTGAGCGATTTCTCGGCCTGCAGCAGCGATATCTCAGGGGAGCTCCAGAGGCTCGCCACCGTCTCCTCCTCCGAACCTCAGCCCGAGCCATGCCTTGGCTTTCTCCAGACGGAGATCATCGAGAGTATCTCGCCGGAGGATCTTCAGCCGACGGTCAAGATCTGCGTCGACGGACTGCAGTCCCCGTCGGTAGCGGTAAAGAGATCGGCGGCAGCGAAGCTGAGGCTGTTGGCGAAGAACCGAGAGGATAACCGCGCTCTGATCGGCGAGTCTGGCGCGGTGCCTGCTCTGGTTTCCCTGCTCCGGTGCAACGATCCGTGGACGCAGGAGCATGCCGTGACGGCGTTGCTGAATCTGTCTCTGCTGGAAGAGAACAAGGAGCTGATAACGAATGCCGGTGCGGTGAAGTCGGTGATTTACGTTCTTAAGACAGGGACAGAGACTTCGAAGCAGAACGCGGCGTGTGCGCTTATGAGTCTGGCGTTAGTGGAGGAGAACAAGAGGTCGATCGGCGCATGCGGGGCGATACCGCCGCTGGTGTCTTTGCTGATGAGTGGGTCCCAGAGAGGGAAGAAGGACGCGCTGACGACGTTGTATAAGCTGTGTTCGGTGAGGCAGAACAAGGAGAGGGCGGTGAGCGCAGGAGCGGTGAGGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGCGGGATGGCGGATAAGGCGATGGTGGTTCTGAACAGCTTGGCGGGGACTGAGGAGGGGAAGGAGGCAATTGTGGAGGAAGGTGGGATTGCTGCGTTTGTTGAAGTTATTGAAGATGGGTCGGTTAAGGGGAAGGAGTTTGCTGTTTTTACTCTTGTTCAGCTCTGTGCTCACAACGTTACCAACAGATCCTTGCTTGTTAGGGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCCCAGAACGCCTCTGTTCGAGCTAAGCACAAGGCTGAGACACTCCTTCGATATTTGAGAGAATCAAGACATGAAGCTTCCTGTTCAAGTCCTTAG 1233 0.5604 MVSAEKDSHSNSNSNENKTYRAIGRSMRTVRSKVFQHDHATCVSDSLTGSLMELASRNNKSVTEEQLLELSQTLSDFSACSSDISGELQRLATVSSSEPQPEPCLGFLQTEIIESISPEDLQPTVKICVDGLQSPSVAVKRSAAAKLRLLAKNREDNRALIGESGAVPALVSLLRCNDPWTQEHAVTALLNLSLLEENKELITNAGAVKSVIYVLKTGTETSKQNAACALMSLALVEENKRSIGACGAIPPLVSLLMSGSQRGKKDALTTLYKLCSVRQNKERAVSAGAVRPLVELVAEQGSGMADKAMVVLNSLAGTEEGKEAIVEEGGIAAFVEVIEDGSVKGKEFAVFTLVQLCAHNVTNRSLLVREGGIPPLVALSQNASVRAKHKAETLLRYLRESRHEASCSSP 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2554 410 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 207 IPR000225 GO:0005515
Aed6g2554 410 SMART arm_5 154 194 IPR000225 GO:0005515
Aed6g2554 410 SMART arm_5 318 358 IPR000225 GO:0005515
Aed6g2554 410 SMART arm_5 360 400 IPR000225 GO:0005515
Aed6g2554 410 SMART arm_5 195 235 IPR000225 GO:0005515
Aed6g2554 410 SMART arm_5 236 276 IPR000225 GO:0005515
Aed6g2554 410 Pfam Armadillo/beta-catenin-like repeat 156 193 IPR000225 GO:0005515
Aed6g2554 410 Pfam Armadillo/beta-catenin-like repeat 238 276 IPR000225 GO:0005515
Aed6g2554 410 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 247 289 IPR000225 GO:0005515
Aed6g2554 410 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 17 406 - -
Aed6g2554 410 PANTHER U BOX DOMAIN-CONTAINING 17 406 - -
Aed6g2554 410 SUPERFAMILY ARM repeat 121 399 IPR016024 -
Aed6g2554 410 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 288 330 IPR000225 GO:0005515
Aed6g2554 410 Gene3D - 263 405 IPR011989 -
Aed6g2554 410 Gene3D - 110 262 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2554 Aed-Chr6 26625653 26629012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2554 120 403 U-box Gene Family AT2G23140 48.944 1.68e-79 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2554 - - gmx:100792402 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2554 6 26625653 26629012 Aed9g0760 9 5306859 5310427 PCT