Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2548 ATGCGGAAAGACGAGGCCAAAGCGGTGAATTCCTGGTCTGACTCCGCCTTGGAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTCCGCCGGAAACACGATTGTGATACAGGCCTTCCCCGACGACAGCGTGAAATCGATTCACGAGCGTATCCAAAACATGAAGGGAATTCCATTGTTTGAGCAGAGGCTAGTTTATCGCGGGAAGCAGCTTCAGTGGGAACAGACTCTCGCTGAGTGTTCCATTCAAAACGACGCCAACCTTCAGTTAGTTGGTCGTATGCGAAGTACTGACCACCCTCAAGCCTGGCAAGTTATCAACGACATGATTTCTCTCGTTTATCGTCTTTGCCGCGGCGAGACTGTTGACGATGCCTTGAAAACCATCAAAGGGTTGATCACCAATTACTTGAGCATGACTCCCAGAATTGACAACGACTCTGCCTCTGGCTACTTTCAGATTTTCATGTCTTCTTCTGCCCCTTCTGTGCTTGCTATGCTCTATATGTCCCCCTACGCAGGTAACAAGGACTATGCTGATTCCTCTGTTAGACACTTTTTGAGTTCCTGTCGCAATACTTTGTCTAAGGCTTTGCATGGTCAGTGTGCTCGTGTCGTCTTGGAGTTTTGTAAATTGCTTAGAAGAGTCGGCTGTCATGACCCTTTGTATCTCTATTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTATTCTGCTTCTGATAATGTTAAGGAGTTGGTTTTCATTCAGGACATTTTCCCCTTTGTTCGTGAGCTTGCTAATAGCTTGCTGAGGGACTTGGACTTGAGTATGGAATCCCCCACGGCTGCGGGGCCTTTGTCCAATGATGTTGGGGATTTTTCTGCATTCTTAATGCCTTTGAGGATTGGTATCAAGGAGCAACAAGCTGTCAAGGATTCTATGGCTCAAGACAAATGCCATAAGAACCTCTTATTTTTGGCCGAGATTGAATGTCTTCATAGTTTGTACATTCAGCTGTTGGACAAAATTGATCACTGCCTTCAAAAAATGGACAAAAGCTTGGCTGATCAGGAAATGATGGAAGGGGGTAGTCTTTATCCTGCATGGTCTCATTATCTTTCCATCTTGAAAGAGCTGTATCAAATTTCCAAGCTTTATGATGGTGCCGAAGAAAAGCTTTGGAGCATTTTGTTGCGGCAAAGAAGTGTGCTGTGTCTGCTGATCGTTCAATATGCTAAGAGAACTGATGAGCATCAGTGGATTCTTGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTAAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGACCGAGTCTTTTGAATACATAGCACGCGCTGAGCCTGAATCTCTACATGCTGGCCTGTTTATGCATTTCAAAAATGAGAAAGCTACTTGGCCAGGTGTACTAAGGGAGTGGTTTCTTCTAGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTTTGGCATGCCCAAATGATCAAAGGAGATTTTTTCCTAATCCTGCATCTAAGGTAAATCCTCTGCACCTTGAGTACTTCAGATTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCATTAGAAGATATAAGGGATGCAGATCCTTATCGGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGACGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCGCTTCATAACATCCATATCTGAGCAGATAACACATTTTGCCAAAGGTTTTGCAGATATTCTTTCAAACTCAAAGCTCCAACAGTACTTCTTCCAAAGTTTAGACCTTGAAGACCTTGATAGGATGTTGCATGCGATTGGGAGTGTTTCCAACTCCAAGTTTCCGTTTCCGTTGTAG 2127 0.4382 MRKDEAKAVNSWSDSALEQRSHIQFFVRMMSAGNTIVIQAFPDDSVKSIHERIQNMKGIPLFEQRLVYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTDHPQAWQVINDMISLVYRLCRGETVDDALKTIKGLITNYLSMTPRIDNDSASGYFQIFMSSSAPSVLAMLYMSPYAGNKDYADSSVRHFLSSCRNTLSKALHGQCARVVLEFCKLLRRVGCHDPLYLYCRSTFGSLLETAGVSYSASDNVKELVFIQDIFPFVRELANSLLRDLDLSMESPTAAGPLSNDVGDFSAFLMPLRIGIKEQQAVKDSMAQDKCHKNLLFLAEIECLHSLYIQLLDKIDHCLQKMDKSLADQEMMEGGSLYPAWSHYLSILKELYQISKLYDGAEEKLWSILLRQRSVLCLLIVQYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMHFKNEKATWPGVLREWFLLVCQAIFNPQNALFLACPNDQRRFFPNPASKVNPLHLEYFRFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIALEDIRDADPYRYTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFITSISEQITHFAKGFADILSNSKLQQYFFQSLDLEDLDRMLHAIGSVSNSKFPFPL 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2548 708 ProSiteProfiles Ubiquitin domain profile. 23 99 IPR000626 GO:0005515
Aed6g2548 708 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 9 695 - -
Aed6g2548 708 SMART hect_3 471 700 IPR000569 GO:0004842
Aed6g2548 708 ProSiteProfiles HECT domain profile. 473 693 IPR000569 GO:0004842
Aed6g2548 708 Gene3D Hect, E3 ligase catalytic domain 573 655 - -
Aed6g2548 708 PRINTS Ubiquitin signature 34 54 IPR019956 -
Aed6g2548 708 PRINTS Ubiquitin signature 76 97 IPR019956 -
Aed6g2548 708 PRINTS Ubiquitin signature 55 75 IPR019956 -
Aed6g2548 708 SUPERFAMILY Hect, E3 ligase catalytic domain 448 684 IPR035983 GO:0004842
Aed6g2548 708 Gene3D Hect, E3 ligase catalytic domains 453 678 - -
Aed6g2548 708 Gene3D - 16 122 - -
Aed6g2548 708 SUPERFAMILY Ubiquitin-like 20 98 IPR029071 -
Aed6g2548 708 Pfam Ubiquitin family 26 97 IPR000626 GO:0005515
Aed6g2548 708 SMART ubq_7 23 95 IPR000626 GO:0005515
Aed6g2548 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 9 695 - -
Aed6g2548 708 Pfam HECT-domain (ubiquitin-transferase) 502 677 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2548 Aed-Chr6 26602015 26604876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2548 23 97 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 38.667 7.52e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2548 - - gmx:100796470 1248.8